RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 HTD2P86397 168 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 IL24Q13007 206 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 RIPK1Q13546 671 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 MMDQ15546 238 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 LTC4SQ16873 150 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ZNF674Q2M3X9 581 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 TMEM42Q69YG0 159 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ERICH5Q6P6B1 374 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ZNF730Q6ZMV8 503 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ZNF367Q7RTV3 350 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 LINC00596Q86U02 117 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ZNF573Q86YE8 665 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 OR4D6Q8NGJ1 314 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 OR13A1Q8NGR1 328 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 RFESDQ8TAC1 157 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 HAVCR2Q8TDQ0 301 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 SLC26A7Q8TE54 656 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 CACNG8Q8WXS5 425 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 EMG1Q92979 244 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 SLAMF9Q96A28 289 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 C17orf77Q96MU5 243 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 FAM103A1Q9BTL3 118 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 ABHD6Q9BV23 337 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 CADM1Q9BY67 442 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 SLA2Q9H6Q3 261 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 KAT8Q9H7Z6 458 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 LINC00574Q9H8X3 128 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 BATF3Q9NR55 127 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 RBFOX1Q9NWB1 397 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 COPS3Q9UNS2 423 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 PIGLQ9Y2B2 252 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 POLDIP2Q9Y2S7 368 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 KIR2DL5BA0A0G2JN68 375 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 KIR2DL5BA0A0G2JPC4 375 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 A6NIN4 97 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 ACOD1A6NK06 481 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 ZNF729A6NN14 1252 aaPredicted RBP3.46□□□□□ -1.86
USP4-209ENST00000475873 C11orf94C9JXX5 98 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 NPIPB11E5RHQ5 1161 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 UBE2CO00762 179 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 IDH3BO43837 385 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 CRTAPO75718 401 aaPredicted RBP3.46□□□□□ -1.86
USP4-209ENST00000475873 OR2H2O95918 312 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TRGV3P03979 118 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 GYPBP06028 91 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 GLAP06280 429 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 RPL35AP18077 110 aaKnown RBP3.46□□□□□ -1.86
USP4-209ENST00000475873 HSD11B1P28845 292 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 HTR1FP30939 366 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 HTR2BP41595 481 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 SLC1A6P48664 564 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 APOC4P55056 127 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 SNU13P55769 128 aaKnown RBP3.46□□□□□ -1.86
USP4-209ENST00000475873 ACTBP60709 375 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 CX3CL1P78423 397 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 KLF10Q13118 480 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TRAM2Q15035 370 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 ZNF146Q15072 292 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 ZNF124Q15973 351 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 C5orf64Q2M2E5 130 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 VMACQ2NL98 169 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 KCTD21Q4G0X4 260 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TEX30Q5JUR7 227 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 SLC35F1Q5T1Q4 408 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 LINC01590Q5TEZ4 76 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 CD200R1LQ6Q8B3 271 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 ASRGL1Q7L266 308 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 SLC16A13Q7RTY0 426 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 VTCN1Q7Z7D3 282 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TMEM179BQ7Z7N9 219 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 RNF113BQ8IZP6 322 aaKnown RBP3.46□□□□□ -1.86
USP4-209ENST00000475873 KIRREL3Q8IZU9 778 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 KIR2DL5AQ8N109 375 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 Q8NAQ8 132 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 PROKR2Q8NFJ6 384 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 OR10X1Q8NGY0 326 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 KIR2DL5BQ8NHK3 375 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 SPDL1Q96EA4 605 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 CEP19Q96LK0 163 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TXN2Q99757 166 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 RARRES2Q99969 163 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 AIFM2Q9BRQ8 373 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 CHRDL1Q9BU40 450 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 PKIBQ9C010 78 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TAS2R1Q9NYW7 299 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 CALYQ9NYX4 217 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 KLHDC2Q9Y2U9 406 aa3.46□□□□□ -1.86
USP4-209ENST00000475873 TRAV10A0A0B4J240 114 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 TRAV39A0A0B4J263 110 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 TRBV4-1A0A0J9YWV2 114 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 PGPEP1LA6NFU8 196 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 C2orf70A6NJV1 201 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 SNTNA6NMZ2 147 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 EVPLLA8MZ36 301 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 HSBP1L1C9JCN9 74 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 BIRC5O15392 142 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 NDUFA3O95167 84 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 NRASP01111 189 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 IL1AP01583 271 aa3.45□□□□□ -1.86
USP4-209ENST00000475873 FOLR2P14207 255 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms