RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SSTR5P35346 364 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 GNG10P50151 68 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNRF1Q8ND25 227 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 LHFPL5Q8TAF8 219 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 TNRC6AQ8NDV7 1962 aaKnown RBP11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 TMEM127O75204 238 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 RAC2P15153 192 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 NDUFB7P17568 137 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 PLA2G5P39877 138 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 TMEM65Q6PI78 240 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 CCDC36Q8IYA8 594 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 LILRB2Q8N423 598 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 BCL2L2Q92843 193 aaPredicted RBP11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 RAB18Q9NP72 206 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 CACNG5Q9UF02 275 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 METRNQ9UJH8 293 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 PUS1Q9Y606 427 aaKnown RBP eCLIP11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 CPAMD8Q8IZJ3 1885 aa11.71□□□□□ -0.54
CCDC88A-211ENST00000471947 BORCS7-ASMTA0A0B4J1R7 106 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 LINC01387J3KSC0 135 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 ST8SIA5O15466 376 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CYC1P08574 325 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 ALDH3B1P43353 468 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 GLIPR1P48060 266 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 ERVFRD-1P60508 538 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 ZNF718Q3SXZ3 478 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 PRSS54Q6PEW0 395 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CBLN2Q8IUK8 224 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 MARC2Q969Z3 335 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 ABHD17AQ96GS6 310 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 OR2D2Q9H210 308 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 SH2D1BO14796 132 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 HEXAP06865 529 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CTSDP07339 412 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CTSSP25774 331 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 PRR30Q53SZ7 412 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 ZNF529Q6P280 563 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 LCN15Q6UWW0 184 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 GFRALQ6UXV0 394 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 FAM89BQ8N5H3 189 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 PLPPR1Q8TBJ4 325 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 C2CD4CQ8TF44 421 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 S100PBPQ96BU1 408 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 GMPPAQ96IJ6 420 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CNTNAP3BQ96NU0 1288 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CNTNAP3Q9BZ76 1288 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 PMELP40967 661 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 FGF12P61328 243 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 CLEC12BQ2HXU8 276 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 KRBOX4Q5JUW0 171 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 RGS7BPQ6MZT1 257 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 OR5A2Q8NGI9 324 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 RNF141Q8WVD5 230 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 H1FXQ92522 213 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 PIK3IP1Q96FE7 263 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 SPRY4Q9C004 299 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 PRDM14Q9GZV8 571 aa11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 SAV1Q9H4B6 383 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-211ENST00000471947 KIR2DS1A0A191URI9 304 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 RPL36A-HNRNPH2H7BZ11 118 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 CHST1O43916 411 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 HOXD11P31277 338 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 KIR2DS4P43632 304 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 KIR2DS1Q14954 304 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 GUCA2BQ16661 112 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 Q3ZCU0 254 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 ADAM5Q6NVV9 412 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 CRIP3Q6Q6R5 217 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 OR5C1Q8NGR4 320 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 OR2G3Q8NGZ4 309 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 KCNMB2Q9Y691 235 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 KIAA1549Q9HCM3 1950 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 SETD2Q9BYW2 2564 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 ZNF891A8MT65 544 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 KIAA1324LA8MWY0 1029 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 DBX2Q6ZNG2 339 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 VKORC1L1Q8N0U8 176 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 SFT2D1Q8WV19 159 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 AKR1E2Q96JD6 320 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 RPS10P5Q9NQ39 176 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 GFOD1Q9NXC2 390 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 URGCP-MRPS24S4R325 110 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 USP9YO00507 2555 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 POLQO75417 2590 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 SMPD2O60906 423 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 IFNA17P01571 189 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 SELENOVP59797 346 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 ETV3LQ6ZN32 361 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 LIAT1Q6ZQX7 453 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 THNSL2Q86YJ6 484 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 SCNM1Q9BWG6 230 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 EDARQ9UNE0 448 aa11.69□□□□□ -0.54
CCDC88A-211ENST00000471947 CCDC168Q8NDH2 2452 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 FAM90A27PA6NNH2 459 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 MKRN2OSH3BPM6 223 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 HAND1O96004 215 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 KIR2DL2P43627 348 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 EIF5AL1Q6IS14 154 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 OR5P3Q8WZ94 311 aa11.68□□□□□ -0.54
CCDC88A-211ENST00000471947 CCL17Q92583 94 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms