RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TRAV8-7A0A075B6U6 113 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 TRAV39A0A0B4J263 110 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 A0A1W2PP11 408 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 A0A1W2PPI3 338 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 SH2D7A6NKC9 451 aaPredicted RBP11.12□□□□□ -0.63
USP4-206ENST00000461553 ADARB2-AS1A8MUL3 147 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 HSD17B6O14756 317 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 GPX5O75715 221 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 GNAO1P09471 354 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 TMEM11P17152 192 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 MAPK3P27361 379 aaPredicted RBP11.12□□□□□ -0.63
USP4-206ENST00000461553 WNT4P56705 351 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 RPS11P62280 158 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP4-206ENST00000461553 OGFRL1Q5TC84 451 aaPredicted RBP11.12□□□□□ -0.63
USP4-206ENST00000461553 SLC16A12Q6ZSM3 486 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 DRAM1Q8N682 238 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 NKAIN3Q8N8D7 197 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 ZNF485Q8NCK3 441 aa11.12□□□□□ -0.63
USP4-206ENST00000461553 TRBV5-7A0A0A0MS05 114 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 A0A1W2PPK0 400 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 TCRBV4S1A1TA0A5B7 111 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 SDCBPO00560 298 aaPredicted RBP11.11□□□□□ -0.63
USP4-206ENST00000461553 CASQ2O14958 399 aaPredicted RBP11.11□□□□□ -0.63
USP4-206ENST00000461553 PF4P02776 101 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 MAS1P04201 325 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 AMY1AP04745 511 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 AMY2AP04746 511 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 GZMHP20718 246 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 IL3RAP26951 378 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 CD83Q01151 205 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 KPRPQ5T749 579 aaPredicted RBP11.11□□□□□ -0.63
USP4-206ENST00000461553 GLIPR1L1Q6UWM5 242 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 THNSL2Q86YJ6 484 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 ARL11Q969Q4 196 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 MRPS24Q96EL2 167 aaKnown RBP11.11□□□□□ -0.63
USP4-206ENST00000461553 DERL3Q96Q80 235 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 RAB9BQ9NP90 201 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 PSORS1C1Q9UIG5 152 aa11.11□□□□□ -0.63
USP4-206ENST00000461553 TSSC4Q9Y5U2 329 aaPredicted RBP11.11□□□□□ -0.63
USP4-206ENST00000461553 A0A1W2PPE3 182 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A18PA6NE21 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A16PA6NEW6 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A20PA6NIJ5 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A9PA6NNJ1 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A12PA8MX19 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A5PA8MXJ8 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 ORC5O43913 435 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 IGKV1D-33P01593 117 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 IGKV1-33P01594 117 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A15PP0C7V4 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A13PP0C7W8 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A14PP0C7W9 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 FAM90A24PP0C7X0 464 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 CELP19835 753 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 CD33P20138 364 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 ZNF816Q0VGE8 651 aaPredicted RBP11.1□□□□□ -0.63
USP4-206ENST00000461553 DOC2BQ14184 412 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 DIAPH2-AS1Q14236 149 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 C6orf183Q5T699 404 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 ZNF497Q6ZNH5 498 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 REC114Q7Z4M0 266 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 BPIFB6Q8NFQ5 453 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 OR52M1Q8NGK5 317 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 CCDC107Q8WV48 283 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 MYDGFQ969H8 173 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 GFOD1Q9NXC2 390 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 ETAA1Q9NY74 926 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 RCC2Q9P258 522 aaKnown RBP11.1□□□□□ -0.63
USP4-206ENST00000461553 ERGIC3Q9Y282 383 aa11.1□□□□□ -0.63
USP4-206ENST00000461553 IGHV3-43A0A0B4J1X8 118 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 PSMB11A5LHX3 300 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 MCRIP1C9JLW8 97 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 C15orf65H3BRN8 121 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 CCRL2O00421 344 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 FGF16O43320 207 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 CD1AP06126 327 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 IGHV3-43DP0DP04 118 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 MGMTP16455 207 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 TMEM30BQ3MIR4 351 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 RAB12Q6IQ22 244 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 MOB3BQ86TA1 216 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 CDH26Q8IXH8 852 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 C5orf56Q8N8D9 126 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 UBALD1Q8TB05 177 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 FBLIM1Q8WUP2 373 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 MND1Q9BWT6 205 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 PLCXD1Q9NUJ7 323 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 TRAPPC2LQ9UL33 140 aa11.09□□□□□ -0.63
USP4-206ENST00000461553 IGHV1-3A0A0C4DH29 117 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 FAM90A10PA6NDY2 464 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 FAM90A7PA6NKC0 464 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 FAM90A23PA8MXZ1 464 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 SPINT2O43291 252 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 CRTAPO75718 401 aaPredicted RBP11.08□□□□□ -0.64
USP4-206ENST00000461553 GAPDHP04406 335 aaKnown RBP11.08□□□□□ -0.64
USP4-206ENST00000461553 REG1BP48304 166 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 GPR50Q13585 617 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 Q3ZCU0 254 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 OXLD1Q5BKU9 147 aa11.08□□□□□ -0.64
USP4-206ENST00000461553 TCTEX1D4Q5JR98 221 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms