RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 FAM192AQ9GZU8 254 aa10.47□□□□□ -0.73
HMGB3-204ENST00000448905 METTL9Q9H1A3 318 aa10.47□□□□□ -0.73
HMGB3-204ENST00000448905 ST3GAL6Q9Y274 331 aa10.47□□□□□ -0.73
HMGB3-204ENST00000448905 TMEM30CPA0ZSE6 113 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 SDCBPO00560 298 aaPredicted RBP10.46□□□□□ -0.73
HMGB3-204ENST00000448905 ZNF780AO75290 641 aaPredicted RBP10.46□□□□□ -0.73
HMGB3-204ENST00000448905 OR7C1O76099 320 aaPredicted RBP10.46□□□□□ -0.73
HMGB3-204ENST00000448905 VDAC1P21796 283 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 REG1BP48304 166 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 ZSCAN26Q16670 478 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 TMEM65Q6PI78 240 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 C18orf65Q6ZTR6 163 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 STX19Q8N4C7 294 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 C8orf31Q8N9H6 132 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 SUMF2Q8NBJ7 301 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 Q8NFD4 153 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 OR52N1Q8NH53 320 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 LGALS12Q96DT0 336 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 DUX3Q96PT4 197 aa10.46□□□□□ -0.73
HMGB3-204ENST00000448905 A0A1W2PPE3 182 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 LINC01548A6NM66 108 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 ORC5O43913 435 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 RPLP1P05386 114 aaKnown RBP10.45□□□□□ -0.74
HMGB3-204ENST00000448905 OR5H8P0DN80 308 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 SSTR5P35346 364 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 ECI1P42126 302 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 PPP3R1P63098 170 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 RAB40BQ12829 278 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 PIGYQ3MUY2 71 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 LPCAT4Q643R3 524 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 ASCL4Q6XD76 172 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 LINC00596Q86U02 117 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 IZUMO1Q8IYV9 350 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 LINC00311Q8N616 119 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 OR10K1Q8NGX5 313 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 PLPPR1Q8TBJ4 325 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 GPR148Q8TDV2 347 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 PDCD1LG2Q9BQ51 273 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 CHCHD6Q9BRQ6 235 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 IFT22Q9H7X7 185 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 ISG20L2Q9H9L3 353 aaKnown RBP10.45□□□□□ -0.74
HMGB3-204ENST00000448905 TMEM138Q9NPI0 162 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 GMPPBQ9Y5P6 360 aa10.45□□□□□ -0.74
HMGB3-204ENST00000448905 IGHV3-72A0A0B4J1Y9 119 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 TRAV39A0A0B4J263 110 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 SEC14L6B5MCN3 397 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 C3orf84H3BNL1 204 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 GABRPO00591 440 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 SPINT2O43291 252 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 TXNL1O43396 289 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 ALPLP05186 524 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 SOX6P35712 828 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF93P35789 620 aaPredicted RBP10.44□□□□□ -0.74
HMGB3-204ENST00000448905 INSL3P51460 131 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 GPR176Q14439 515 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 ZIK1Q3SY52 487 aaPredicted RBP10.44□□□□□ -0.74
HMGB3-204ENST00000448905 Q3ZCU0 254 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 NHLRC3Q5JS37 347 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 ATAD3CQ5T2N8 411 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 C10orf67Q8IYJ2 551 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 Q8N9W7 124 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 NEK7Q8TDX7 302 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 RTN4IP1Q8WWV3 396 aaPredicted RBP10.44□□□□□ -0.74
HMGB3-204ENST00000448905 S1PR3Q99500 378 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 SPACA1Q9HBV2 294 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 ERVK13-1Q9NX77 482 aa10.44□□□□□ -0.74
HMGB3-204ENST00000448905 RPL36Q9Y3U8 105 aaKnown RBP10.44□□□□□ -0.74
HMGB3-204ENST00000448905 LSM4Q9Y4Z0 139 aaKnown RBP10.44□□□□□ -0.74
HMGB3-204ENST00000448905 MCRIP1C9JLW8 97 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 CDRT1O95170 752 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 IGHG4P01861 327 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 MT-ND4P03905 459 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 GTF2F2P13984 249 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 SOX2P48431 317 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 ALDH3A2P51648 485 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 MPV17LQ2QL34 196 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 TMEM30BQ3MIR4 351 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF260Q3ZCT1 412 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 CCDC58Q4VC31 144 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 STEAP3Q658P3 488 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 ZNF529Q6P280 563 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 RPL22L1Q6P5R6 122 aaKnown RBP10.43□□□□□ -0.74
HMGB3-204ENST00000448905 Q8N6K4 173 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 RNF152Q8N8N0 203 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 CCDC107Q8WV48 283 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 C4orf3Q8WVX3 66 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 GFOD1Q9NXC2 390 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 IL36GQ9NZH8 169 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 TRAPPC2LQ9UL33 140 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 ERGIC3Q9Y282 383 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 DNAH9Q9NYC9 4486 aa10.43□□□□□ -0.74
HMGB3-204ENST00000448905 E9PI62 339 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 EI24O14681 340 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 GEMIN2O14893 280 aaKnown RBP10.42□□□□□ -0.74
HMGB3-204ENST00000448905 LUMP51884 338 aaPredicted RBP10.42□□□□□ -0.74
HMGB3-204ENST00000448905 RBM11P57052 281 aaKnown RBP10.42□□□□□ -0.74
HMGB3-204ENST00000448905 TMPRSS11AQ6ZMR5 421 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 RHOXF1Q8NHV9 184 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 ST6GALNAC6Q969X2 333 aa10.42□□□□□ -0.74
HMGB3-204ENST00000448905 AMBNQ9NP70 447 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms