RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CCDC144NLQ6NUI1 221 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 RPL31P62899 125 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 LINC00596Q86U02 117 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 PLPP2O43688 288 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 CAMPP49913 170 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 CD226Q15762 336 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 VWA1Q6PCB0 445 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 MDP1Q86V88 176 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 MUC20Q8N307 709 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 ASPDHA6ND91 283 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 FAM24AA6NFZ4 105 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 BMPR1BO00238 502 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 HSBP1O75506 76 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 CLPPQ16740 277 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 SIRT5Q9NXA8 310 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 MMP24Q9Y5R2 645 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 MYO18BQ8IUG5 2567 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 UBE2L6O14933 153 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 PF4V1P10720 104 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 RPS4Y1P22090 263 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 ZFP36L2P47974 494 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 TM4SF20Q53R12 229 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 SLC23A3Q6PIS1 610 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 FADS6Q8N9I5 356 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 DYRK2Q92630 601 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF665Q9H7R5 613 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 RNF7Q9UBF6 113 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 CSPG4Q6UVK1 2322 aa10.6□□□□□ -0.71
CCDC88A-207ENST00000436346 PCMT1P22061 227 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 MMDQ15546 238 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 D2HGDHQ8N465 521 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 CES1P1Q9UKY3 287 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 SPNP16150 400 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 MOGAT2Q3SYC2 334 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 ASB5Q8WWX0 329 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 C11orf94C9JXX5 98 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 K7N7A8 449 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 HOXC8P31273 242 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 CRYBB2P43320 205 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 C10orf113Q5VZT2 155 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 VN1R4Q7Z5H5 301 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 OR1K1Q8NGR3 316 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 NUP210LQ5VU65 1888 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 C12orf73Q69YU5 71 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 STARD4Q96DR4 205 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 IGHV3-21A0A0B4J1V1 117 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 NQO2P16083 231 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 PMS2P11Q13670 270 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 C9orf40Q8IXQ3 194 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 ZBTB44Q8NCP5 570 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 ZMIZ1Q9ULJ6 1067 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 HILPDAQ9Y5L2 63 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 RNF224P0DH78 156 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 FBXW9Q5XUX1 488 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 OR4C5Q8NGB2 326 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 EAF1Q96JC9 268 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 HAX1O00165 279 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 PTHLHP12272 177 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 FABP4P15090 132 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 LIAT1Q6ZQX7 453 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 C16orf82Q7Z2V1 217 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 GVQW1Q8N7I0 195 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF680Q8NEM1 530 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 FAM210BQ96KR6 192 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 METTL26Q96S19 204 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 SF3B5Q9BWJ5 86 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 OR51B2Q9Y5P1 312 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 C5orf67F2Z3F1 127 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 WDR73Q6P4I2 378 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 FAM222BQ8WU58 562 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 P2RX4Q99571 388 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 OR2J1Q9GZK6 312 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 GPR35Q9HC97 309 aa10.59□□□□□ -0.71
CCDC88A-207ENST00000436346 GFRA3O60609 400 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 PSMB2P49721 201 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 GHITMQ9H3K2 345 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 PARD6AQ9NPB6 346 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 CDC42EP2O14613 210 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 OR10G4Q8NGN3 311 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 OR10G9Q8NGN4 311 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 OR10G7Q8NGN6 311 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 KLHDC1Q8N7A1 406 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 OR4A4PQ8NGN8 299 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 DUSP21Q9H596 190 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 SLC35B1P78383 322 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 C5orf17Q8NAS9 161 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 IGSF23A1L1A6 192 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 SS18L1O75177 396 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 SRD5A3Q9H8P0 318 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 HEXA-AS1Q9H8Q6 139 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 P01737 135 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 ATP5J2P56134 94 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 WNT3P56703 355 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 C19orf48Q6RUI8 117 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 SSX8Q7RTT4 187 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 SLC35B3Q9H1N7 401 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 MFNGO00587 321 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 NDUFB6O95139 128 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 GCSHP23434 173 aa10.58□□□□□ -0.72
CCDC88A-207ENST00000436346 IQCJQ1A5X6 159 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms