RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 GABRA1P14867 456 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 NELFEP18615 380 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 M6PRP20645 277 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 SLC6A1P30531 599 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 EIF1P41567 113 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 RAB5BP61020 215 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 CDK5Q00535 292 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 SKP2Q13309 424 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 CENPWQ5EE01 88 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF684Q5T5D7 378 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 NXNL2Q5VZ03 156 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 DHRS4L2Q6PKH6 230 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 NCCRP1Q6ZVX7 275 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 SLC25A45Q8N413 288 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 OR1P1Q8NH06 330 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 JOSD2Q8TAC2 188 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 Q8WTZ3 238 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 DCUN1D1Q96GG9 259 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 OR2M2Q96R28 347 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 CMSS1Q9BQ75 279 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 KIFC1Q9BW19 673 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 SAMD10Q9BYL1 202 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 TXNIPQ9H3M7 391 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 C19orf12Q9NSK7 152 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 TMEM216Q9P0N5 145 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 DOK5Q9P104 306 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 ARID1AO14497 2285 aa3.46□□□□□ -1.85
CCDC88A-206ENST00000430086 FHAD1B1AJZ9 1412 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 IGLV1-50A0A075B6I6 118 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 IGHV2-26A0A0B4J1V2 119 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 IGHV3-66A0A0C4DH42 116 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 MYBPHLA2RUH7 354 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 A6NDX4 124 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 C9JQL5 133 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CHST10O43529 356 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 EPPINO95925 133 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 HAND1O96004 215 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CRYBA1P05813 215 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CST2P09228 141 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 IL3RAP26951 378 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CXCL5P42830 114 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 LHX2P50458 406 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 BTN3A2P78410 334 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 EMX1Q04741 257 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 MEF2CQ06413 473 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 SSX1Q16384 188 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 MPV17L2Q567V2 206 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 ACSBG2Q5FVE4 666 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CLLU1OSQ5K130 101 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 TMEM42Q69YG0 159 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 GUSBP11Q6P575 273 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 SLC36A1Q7Z2H8 476 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 LYG2Q86SG7 212 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 LINC00596Q86U02 117 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF429Q86V71 674 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 Q8N9W7 124 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 OR11L1Q8NGX0 322 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CLDN23Q96B33 292 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 FAM210BQ96KR6 192 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 LINC01587Q99440 93 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 EIF5A2Q9GZV4 153 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 ASB7Q9H672 318 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 HES4Q9HCC6 221 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 BATF3Q9NR55 127 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 C14orf166Q9Y224 244 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 POMPQ9Y244 141 aa3.46□□□□□ -1.86
CCDC88A-206ENST00000430086 CLUHO75153 1309 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 NCOA1Q15788 1441 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 IGLV11-55A0A075B6I3 123 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 A0A1B0GV50 99 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 C5orf49A4QMS7 147 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 C2orf74A8MZ97 194 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 C8orf87E5RJ46 101 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 FFAR1O14842 300 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 CHP2O43745 196 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 ANGPTL7O43827 346 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 SCO1O75880 301 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 IGLV2-23P01705 113 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 CD5P06127 495 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 GADD45AP24522 165 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 CDK9P50750 372 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 RAB4BP61018 213 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 HIST1H3AP68431 136 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 H3F3AP84243 136 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 EBI3Q14213 229 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF773Q6PK81 442 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 CEMP1Q6PRD7 247 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 HIST2H3AQ71DI3 136 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 OR51D1Q8NGF3 324 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 OR1L8Q8NGR8 309 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 KCTD4Q8WVF5 259 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 TNFAIP8L1Q8WVP5 186 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 SLC35G5Q96KT7 338 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 OR52E6Q96RD3 313 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 SIGMAR1Q99720 223 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 PRSS27Q9BQR3 290 aa3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 ZSCAN16Q9H4T2 348 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 ZNF223Q9UK11 482 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 KLF13Q9Y2Y9 288 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-206ENST00000430086 CARMIL3Q8ND23 1372 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms