RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ARL11Q969Q4 196 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 TMEM106AQ96A25 262 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 C9orf16Q9BUW7 83 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 NCOR1P1Q9H4R4 102 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 ZFP57Q9NU63 452 aa11.45□□□□□ -0.58
SDC1-204ENST00000429035 RPL36Q9Y3U8 105 aaKnown RBP11.45□□□□□ -0.58
SDC1-204ENST00000429035 AIPO00170 330 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 AP4M1O00189 453 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 GEMIN2O14893 280 aaKnown RBP11.44□□□□□ -0.58
SDC1-204ENST00000429035 IGHG2P01859 326 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 ZNF93P35789 620 aaPredicted RBP11.44□□□□□ -0.58
SDC1-204ENST00000429035 ZNF816Q0VGE8 651 aaPredicted RBP11.44□□□□□ -0.58
SDC1-204ENST00000429035 CXorf66Q5JRM2 361 aaPredicted RBP11.44□□□□□ -0.58
SDC1-204ENST00000429035 XAF1Q6GPH4 301 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 FAM53AQ6NSI3 398 aaPredicted RBP11.44□□□□□ -0.58
SDC1-204ENST00000429035 COMMD1Q8N668 190 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 OR10A7Q8NGE5 316 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 OR13C5Q8NGS8 318 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 OR52N1Q8NH53 320 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 ORAI1Q96D31 301 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 EAF1Q96JC9 268 aaPredicted RBP11.44□□□□□ -0.58
SDC1-204ENST00000429035 FAM53CQ9NYF3 392 aa11.44□□□□□ -0.58
SDC1-204ENST00000429035 LOC100130705A0A1B0GUX0 176 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 A0A1W2PP11 408 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 LINC01548A6NM66 108 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 CCL24O00175 119 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 RPLP1P05386 114 aaKnown RBP11.43□□□□□ -0.58
SDC1-204ENST00000429035 VSIG8P0DPA2 414 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 BDKRB2P30411 391 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 GPR12P47775 334 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 LUMP51884 338 aaPredicted RBP11.43□□□□□ -0.58
SDC1-204ENST00000429035 DGCR2P98153 550 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 DCTN2Q13561 401 aaKnown RBP11.43□□□□□ -0.58
SDC1-204ENST00000429035 SLC22A6Q4U2R8 563 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 OR2G6Q5TZ20 316 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 ZNF529Q6P280 563 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 TEX38Q6PEX7 206 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 IZUMO1Q8IYV9 350 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 PRR18Q8N4B5 295 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 STX19Q8N4C7 294 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 OR10V1Q8NGI7 309 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 OR2T10Q8NGZ9 312 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 RHOXF1Q8NHV9 184 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 APH1BQ8WW43 257 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 P2RX4Q99571 388 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 B9D2Q9BPU9 175 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 RASL11BQ9BPW5 248 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 LINC00574Q9H8X3 128 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 TMEM138Q9NPI0 162 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 GFOD1Q9NXC2 390 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 DNAH9Q9NYC9 4486 aa11.43□□□□□ -0.58
SDC1-204ENST00000429035 SLC31A2O15432 143 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 RRP9O43818 475 aaKnown RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 LIMS3P0CW19 117 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 LIMS4P0CW20 117 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 SLC6A1P30531 599 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 RIPK1Q13546 671 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 GPR50Q13585 617 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 SMN1Q16637 294 aaKnown RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 MPV17LQ2QL34 196 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 KLHL22Q53GT1 634 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 RPL22L1Q6P5R6 122 aaKnown RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 SLC16A12Q6ZSM3 486 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 LINC00596Q86U02 117 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 TGIF2LXQ8IUE1 241 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 Q8N9W7 124 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 RBMXL1Q96E39 390 aaKnown RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 RAX2Q96IS3 184 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 ZNF184Q99676 751 aaPredicted RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 LIN7CQ9NUP9 197 aaKnown RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 PAK1IP1Q9NWT1 392 aaPredicted RBP11.42□□□□□ -0.58
SDC1-204ENST00000429035 GNG12Q9UBI6 72 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 TRAPPC2LQ9UL33 140 aa11.42□□□□□ -0.58
SDC1-204ENST00000429035 H0YHG0 523 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 C15orf65H3BRN8 121 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 GZMHP20718 246 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 VDAC1P21796 283 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 MYF6P23409 242 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 ETV1P50549 477 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 PAX5Q02548 391 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 PNLIPRP3Q17RR3 467 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 NHLRC3Q5JS37 347 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 TMPRSS11AQ6ZMR5 421 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 ZFP41Q8N8Y5 198 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 ZNF555Q8NEP9 628 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 OR5M8Q8NGP6 311 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 OR8U1Q8NH10 309 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 OR4K15Q8NH41 348 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 RTN4IP1Q8WWV3 396 aaPredicted RBP11.41□□□□□ -0.58
SDC1-204ENST00000429035 WWC2-AS2Q96NR7 200 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 PRR25Q96S07 402 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 SLC29A1Q99808 456 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 ABCG5Q9H222 651 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 IL36GQ9NZH8 169 aa11.41□□□□□ -0.58
SDC1-204ENST00000429035 ZMAT5Q9UDW3 170 aaKnown RBP11.41□□□□□ -0.58
SDC1-204ENST00000429035 PNMA8CA0A1B0GUJ8 204 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 MAGEA13PA6NCF6 341 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 ZNF736B4DX44 427 aaPredicted RBP11.4□□□□□ -0.58
SDC1-204ENST00000429035 MOSP00540 346 aa11.4□□□□□ -0.58
SDC1-204ENST00000429035 SLC2A2P11168 524 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms