RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SYNGR1O43759 233 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 MAGEA5P43359 124 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 PSG5Q15238 335 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 PWWP2BQ6NUJ5 590 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 OLIG3Q7RTU3 272 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 TEX37Q96LM6 180 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ALKBH7Q9BT30 221 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SPNS1Q9H2V7 528 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 PARP14Q460N5 1801 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 A0A0B4J2E0 115 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 A0A1B0GX12 115 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SPINK4O60575 86 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 CFDP00746 253 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SBK3P0C264 359 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 CLEC2LP0C7M8 214 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 DYNLT3P51808 116 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ATP5J2P56134 94 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SLC37A1P57057 533 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SPINK9Q5DT21 86 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 TEPPQ6URK8 271 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 NUDT10Q8NFP7 164 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 SMIM4Q8WVI0 70 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 MS4A10Q96PG2 267 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 TSPAN32Q96QS1 320 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 NAT8Q9UHE5 227 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ZMIZ1Q9ULJ6 1067 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 B4DEV8 164 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 AKR7A2O43488 359 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 GALNSP34059 522 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 RAB24Q969Q5 203 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 TMPRSS13Q9BYE2 586 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 WSB1Q9Y6I7 421 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 LEUTXA8MZ59 168 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 CLDN34H7C241 214 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 INHBBP09529 407 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 NXPH1P58417 271 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 PRSS42Q7Z5A4 293 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 OR10G8Q8NGN5 311 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 MRPL30Q8TCC3 161 aaKnown RBP6.05□□□□□ -1.44
SCN1A-204ENST00000423058 FLVCR2Q9UPI3 526 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 OR51B2Q9Y5P1 312 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ABCA7Q8IZY2 2146 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV3OR16-12A0A075B7B8 117 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 OR4C46A6NHA9 309 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 NKX2-2O95096 273 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 MPV17LQ2QL34 196 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 OR4A47Q6IF82 309 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 CLEC9AQ6UXN8 241 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF841Q6ZN19 808 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 ANGPTL4Q9BY76 406 aa6.05□□□□□ -1.44
SCN1A-204ENST00000423058 NHSL1Q5SYE7 1610 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 SHISA8B8ZZ34 492 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 C11orf94C9JXX5 98 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 CHST1O43916 411 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FCMRO60667 390 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ADRA2AP08913 450 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 JOSD1Q15040 202 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 STPG1Q5TH74 334 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 PRNTQ86SH4 94 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 MDP1Q86V88 176 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 OR2C3Q8N628 320 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 PTX4Q96A99 478 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 WDR89Q96FK6 387 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 C2orf88Q9BSF0 95 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 GPR35Q9HC97 309 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 MYLKQ15746 1914 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 CCL2P13500 99 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 POLR2IP36954 125 aaKnown RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 P2RY6Q15077 328 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 SP6Q3SY56 376 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 C9orf50Q5SZB4 431 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 RNF165Q6ZSG1 346 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 SLC35E3Q7Z769 313 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ZNF275Q9NSD4 429 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 POLEQ07864 2286 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 SPTBN1Q01082 2364 aaKnown RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 DOCK10Q96BY6 2186 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ALX3O95076 343 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 APCSP02743 223 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 RNF224P0DH78 156 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 PSG9Q00887 426 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 TIAL1Q01085 375 aaKnown RBP eCLIP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FUNDC1Q8IVP5 155 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FOXD3Q9UJU5 478 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ING1Q9UK53 422 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 CDC42EP3Q9UKI2 254 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 TRAV30A0A087WSZ9 112 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 GCAP28676 217 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 ZXDAP98168 799 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FAM78BQ5VT40 261 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 FBXW9Q5XUX1 488 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 MAMSTRQ6ZN01 415 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 OR8A1Q8NGG7 326 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 TMEM37Q8WXS4 190 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 PHYHIPLQ96FC7 376 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 GEMIN7Q9H840 131 aaKnown RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 GPR27Q9NS67 375 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 RALYQ9UKM9 306 aaKnown RBP6.04□□□□□ -1.44
SCN1A-204ENST00000423058 NRXN3Q9Y4C0 1643 aa6.04□□□□□ -1.44
SCN1A-204ENST00000423058 IGHV5-10-1A0A0J9YXX1 117 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms