RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SPEGQ15772 3267 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 A0A0G2JRQ6 117 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 A0A1W2PPQ1 181 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 LRRC3CA6NJW4 275 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 CCDC85CA6NKD9 419 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 AQP7P3A6NL99 342 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 GGCTO75223 188 aaKnown RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 MDH2P40926 338 aaKnown RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 CLDN17P56750 224 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 MALLQ13021 153 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 CNN3Q15417 329 aaKnown RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 CLEC12BQ2HXU8 276 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 C10orf128Q5T292 105 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 BTNL3Q6UXE8 466 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 FOXL2NBQ6ZUU3 175 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 MRPL52Q86TS9 123 aaKnown RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 WDR5BQ86VZ2 330 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 ZNF573Q86YE8 665 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 CRISPLD2Q9H0B8 497 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 IL36GQ9NZH8 169 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 OR6C3Q9NZP0 311 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 SEMA5BQ9P283 1151 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 IL17BQ9UHF5 180 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 MRPS18CQ9Y3D5 142 aaKnown RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 TRANK1O15050 2925 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 IGKV1D-13A0A0B4J2D9 117 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 LOC102725191A0A1B0GVB3 256 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 MAP1LC3B2A6NCE7 125 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 M0QZK8 103 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 TNFSF12O43508 249 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 PIAS2O75928 621 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 IFNA1P01562 189 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 RPLP1P05386 114 aaKnown RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 IGKV1-13P0DP09 117 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 TCN2P20062 427 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 OR3A1P47881 315 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 MEF2BQ02080 365 aaPredicted RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 LHFPL2Q6ZUX7 228 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 OR5D13Q8NGL4 314 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 BORCS8Q96FH0 119 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 MAP1LC3BQ9GZQ8 125 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 A6NNC1 897 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 TOX3O15405 576 aaPredicted RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 ZNF737O75373 536 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SCGB1D1O95968 90 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 LINC00614P0C842 121 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 PTGDSP41222 190 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 GUCA1AP43080 201 aaPredicted RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 PRSS12P56730 875 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SERF2P84101 59 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 PRDX4Q13162 271 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SHBQ15464 509 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SHISA6Q6ZSJ9 500 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 CISD2Q8N5K1 135 aaKnown RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 ZNF525Q8N782 197 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 OR1L3Q8NH93 324 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SCGB1C1Q8TD33 95 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 IL22RA2Q969J5 263 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 WFIKKN1Q96NZ8 548 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 KLRF1Q9NZS2 232 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 NAGKQ9UJ70 344 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 MED12Q93074 2177 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SLC22A20A6NK97 555 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 TLX3O43711 291 aaPredicted RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 RPL29P47914 159 aaKnown RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 CNN1P51911 297 aaKnown RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 RBM11P57052 281 aaKnown RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 MRPS11P82912 194 aaKnown RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 ZNF92Q03936 586 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 DLX2Q07687 328 aaPredicted RBP9.18□□□□□ -0.94
USP54-204ENST00000422491 ARL16Q0P5N6 197 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 TMEM41BQ5BJD5 291 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 TMEM42Q69YG0 159 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 Q6ZS49 121 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 SPTSSAQ969W0 71 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 ZNF442Q9H7R0 627 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 PLEK2Q9NYT0 353 aa9.18□□□□□ -0.94
USP54-204ENST00000422491 IGLV3-32A0A0A0MS00 114 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 H0Y980 276 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 TP53I11O14683 189 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 GABRG2P18507 467 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 CRYGSP22914 178 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 MSX1P28360 303 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 OR10J1P30954 320 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 PCP4P48539 62 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 BLKP51451 505 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 OR2T10Q8NGZ9 312 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 TMEM54Q969K7 222 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 RPUSD4Q96CM3 377 aaKnown RBP9.17□□□□□ -0.94
USP54-204ENST00000422491 RAB40CQ96S21 281 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 PARLQ9H300 379 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 OR51I2Q9H344 312 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 MYO15AQ9UKN7 3530 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 TMEM250H0YL14 139 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 TUSC2O75896 110 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 RPS18P62269 152 aaKnown RBP9.17□□□□□ -0.94
USP54-204ENST00000422491 LRRC75BQ2VPJ9 315 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 HAPLN4Q86UW8 402 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 ANAPC16Q96DE5 110 aa9.17□□□□□ -0.94
USP54-204ENST00000422491 CCL28Q9NRJ3 127 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms