RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 OR52M1Q8NGK5 317 aa9.16□□□□□ -0.94
SQSTM1-203ENST00000422245 SPACA1Q9HBV2 294 aa9.16□□□□□ -0.94
SQSTM1-203ENST00000422245 BABAM2Q9NXR7 383 aa9.16□□□□□ -0.94
SQSTM1-203ENST00000422245 ING4Q9UNL4 249 aa9.16□□□□□ -0.94
SQSTM1-203ENST00000422245 DIMT1Q9UNQ2 313 aaKnown RBP9.16□□□□□ -0.94
SQSTM1-203ENST00000422245 TRBV5-5A0A0J9YX44 114 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 SERPINE3A8MV23 424 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 CCRL2O00421 344 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 GEMIN2O14893 280 aaKnown RBP9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 OGG1O15527 345 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 GTF2F2P13984 249 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 FSTP19883 344 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 IL3RAP26951 378 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 SLC35B1P78383 322 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 DIAPH2-AS1Q14236 149 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 GPR176Q14439 515 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 TMEM30BQ3MIR4 351 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 Q3ZCU0 254 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 YIF1BQ5BJH7 314 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 SLC35E3Q7Z769 313 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 FOXRED2Q8IWF2 684 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 STX19Q8N4C7 294 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 LINC00311Q8N616 119 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 COMMD1Q8N668 190 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 LINC00482Q8N8I6 264 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 NEK7Q8TDX7 302 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 DPF1Q92782 380 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 ZNF184Q99676 751 aaPredicted RBP9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 RAB9BQ9NP90 201 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 CHCHD3Q9NX63 227 aaKnown RBP9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 ZNF581Q9P0T4 197 aa9.15□□□□□ -0.94
SQSTM1-203ENST00000422245 TRAV39A0A0B4J263 110 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 IGHV1-3A0A0C4DH29 117 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 C15orf65H3BRN8 121 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 SDCBPO00560 298 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 ORC5O43913 435 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 GPX5O75715 221 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 BAG2O95816 211 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 MPIG6BO95866 241 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 IGHG2P01859 326 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 GAPDHP04406 335 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 IGFBP3P17936 291 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 EBI3Q14213 229 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 HNF4GQ14541 408 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 Q499Y3 187 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 SLC22A6Q4U2R8 563 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 ATAD3CQ5T2N8 411 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 DMKNQ6E0U4 476 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 ETV3LQ6ZN32 361 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 OR2W3Q7Z3T1 314 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 ZNF329Q86UD4 541 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 SETD9Q8NE22 299 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 OR13C5Q8NGS8 318 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 GHSRQ92847 366 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 ARL11Q969Q4 196 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 NOL4LQ96MY1 436 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 MCRIP2Q9BUT9 160 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 C8orf4Q9NR00 106 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 GFOD1Q9NXC2 390 aa9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 RCC2Q9P258 522 aaKnown RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 SIRT4Q9Y6E7 314 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-203ENST00000422245 A0A1W2PPE3 182 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 NUDT19A8MXV4 375 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 AIPO00170 330 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 AP4M1O00189 453 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 EBAG9O00559 213 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 TXNL1O43396 289 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 REG1BP48304 166 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 TAS2R43P59537 309 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 EGFEM1PQ0D2K5 195 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 C6orf183Q5T699 404 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 TTC23Q5W5X9 447 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 ZNF497Q6ZNH5 498 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 MOB3BQ86TA1 216 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 TGIF2LXQ8IUE1 241 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 MRPL41Q8IXM3 137 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 STPG2Q8N412 459 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 PACRGLQ8N7B6 248 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 OR2T10Q8NGZ9 312 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 CYGBQ8WWM9 190 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 MRPS24Q96EL2 167 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 TMEM80Q96HE8 168 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 PGLYRP3Q96LB9 341 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 ZFP57Q9NU63 452 aa9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 LIN7CQ9NUP9 197 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-203ENST00000422245 TRAV8-7A0A075B6U6 113 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 TRBV5-7A0A0A0MS05 114 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 A0A1W2PP11 408 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 MAGEA13PA6NCF6 341 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 FAM90A10PA6NDY2 464 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 FAM90A7PA6NKC0 464 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 NCBP2LA6PVI3 153 aaKnown RBP9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 FAM90A23PA8MXZ1 464 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 K7EIL1 84 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 SPINT2O43291 252 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 CA11O75493 328 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 LALBAP00709 142 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 MT-ND4P03905 459 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 MYCNOSP40205 109 aa9.12□□□□□ -0.95
SQSTM1-203ENST00000422245 GPR12P47775 334 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms