RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PAHP00439 452 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 MT-ND4P03905 459 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 ARG1P05089 322 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 GLAP06280 429 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 MELTFP08582 738 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 CGB3P0DN86 165 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 CGB7P0DN87 165 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 SNRPBP14678 240 aaKnown RBP10.15□□□□□ -0.78
SKA1-203ENST00000417656 NFYBP25208 207 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 RANBP1P43487 201 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 NCS1P62166 190 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 DYNC1I2Q13409 638 aaKnown RBP10.15□□□□□ -0.78
SKA1-203ENST00000417656 LTC4SQ16873 150 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 KRTAP24-1Q3LI83 254 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 MIDNQ504T8 468 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 UTF1Q5T230 341 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 ZNF626Q68DY1 528 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 ZNF565Q8N9K5 539 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 MRPL30Q8TCC3 161 aaKnown RBP10.15□□□□□ -0.78
SKA1-203ENST00000417656 LGALS14Q8TCE9 139 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 KIRREL1Q96J84 757 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 FAAP24Q9BTP7 215 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 CLEC7AQ9BXN2 247 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 NAA50Q9GZZ1 169 aaKnown RBP10.15□□□□□ -0.78
SKA1-203ENST00000417656 ZNF286AQ9HBT8 521 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 IDI2-AS1Q9NZ38 188 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 RAB22AQ9UL26 194 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 TRAPPC2LQ9UL33 140 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 FAM96BQ9Y3D0 163 aa10.15□□□□□ -0.78
SKA1-203ENST00000417656 HOXA3O43365 443 aaPredicted RBP10.14□□□□□ -0.79
SKA1-203ENST00000417656 CA11O75493 328 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 FBP1P09467 338 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 RAB6AP20340 208 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 PAX6P26367 422 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 ALDH3B2P48448 385 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 UBA52P62987 128 aaKnown RBP10.14□□□□□ -0.79
SKA1-203ENST00000417656 SLC9A3R2Q15599 337 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 MOGAT2Q3SYC2 334 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 IDNKQ5T6J7 187 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 OR52W1Q6IF63 320 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 Q6YL49 198 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 SLC16A12Q6ZSM3 486 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 LHFPL4Q7Z7J7 247 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 GAPTQ8N292 157 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 FAM89BQ8N5H3 189 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 OR11H6Q8NGC7 330 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 OR56B1Q8NGI3 324 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 RFESDQ8TAC1 157 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 AJUBAQ96IF1 538 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 ARHGAP5-AS1Q96IT6 56 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 PRDM13Q9H4Q3 707 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 TNFRSF19Q9NS68 423 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 PLEKHJ1Q9NW61 149 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 ZNRD1Q9P1U0 126 aa10.14□□□□□ -0.79
SKA1-203ENST00000417656 RNF212BA8MTL3 300 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 C12orf77C9JDV5 145 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 NPIPB11E5RHQ5 1161 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 C15orf65H3BRN8 121 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 TRIM77I1YAP6 450 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 GABARAPO95166 117 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 IGHV4-59P01825 116 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 TFAP2AP05549 437 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 RCC1P18754 421 aaPredicted RBP10.13□□□□□ -0.79
SKA1-203ENST00000417656 SERPINB10P48595 397 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 LGALS4P56470 323 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 TMEM50BP56557 158 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 VBP1P61758 197 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 PLAC9Q5JTB6 97 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 LDLRAD2Q5SZI1 272 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 C6orf183Q5T699 404 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 Q6ZPA2 131 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 LIAT1Q6ZQX7 453 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 GPR141Q7Z602 305 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 LDLRAD3Q86YD5 345 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 ABHD12Q8N2K0 398 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.13□□□□□ -0.79
SKA1-203ENST00000417656 LEAP2Q969E1 77 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 ARL11Q969Q4 196 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 HDHD3Q9BSH5 251 aaPredicted RBP10.13□□□□□ -0.79
SKA1-203ENST00000417656 PECRQ9BY49 303 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 LINC00574Q9H8X3 128 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 CHMP1AQ9HD42 196 aaPredicted RBP10.13□□□□□ -0.79
SKA1-203ENST00000417656 AK3Q9UIJ7 227 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 ATRQ13535 2644 aa10.13□□□□□ -0.79
SKA1-203ENST00000417656 A0A087X0M5 115 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 IGHV3-43A0A0B4J1X8 118 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 A0A1B0GX30 115 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 ORC5O43913 435 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 IGHV3-7P01780 117 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 IGHV3-43DP0DP04 118 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 CD34P28906 385 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 RPS19P39019 145 aaKnown RBP10.12□□□□□ -0.79
SKA1-203ENST00000417656 GNG10P50151 68 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 PLA1AQ53H76 456 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 GPR107Q5VW38 600 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 OLFML2AQ68BL7 652 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 Q6ZTK2 550 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 C5orf24Q7Z6I8 188 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 ANKRD13BQ86YJ7 626 aa10.12□□□□□ -0.79
SKA1-203ENST00000417656 DYNAPQ8N1N2 210 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms