RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 IL24Q13007 206 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 TMEM268Q5VZI3 342 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 NAXEQ8NCW5 288 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 LHFPL5Q8TAF8 219 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 GMPPAQ96IJ6 420 aaPredicted RBP12.6□□□□□ -0.39
USP4-203ENST00000415188 SMIM8Q96KF7 97 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 SPIN2AQ99865 258 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 SPIN2BQ9BPZ2 258 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 TAF9BQ9HBM6 251 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 SPRR3Q9UBC9 169 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 PRSS50Q9UI38 385 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 FAM215AQ9Y5M1 114 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 TACC2O95359 2948 aa12.6□□□□□ -0.39
USP4-203ENST00000415188 FAM221AA4D161 298 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 TRDCB7Z8K6 153 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 AQP7O14520 342 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 MPPED1O15442 326 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 GPR137BO60478 399 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 CDS2O95674 445 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 IL18BPO95998 194 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 APOC3P02656 99 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 P2RY1P47900 373 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 SULT1A2P50226 295 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 TFF3Q07654 80 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 PJVKQ0ZLH3 352 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 BTN1A1Q13410 526 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 PHLDA2Q53GA4 152 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 BRICD5Q6PL45 260 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 Q6ZPA2 131 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 LDLRAD3Q86YD5 345 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 GLYATL2Q8WU03 294 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 AMDHD2Q9Y303 409 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 LSM5Q9Y4Y9 91 aaKnown RBP12.59□□□□□ -0.39
USP4-203ENST00000415188 POMT1Q9Y6A1 747 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 BORCS7-ASMTA0A0B4J1R7 106 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 TMEM218A2RU14 115 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 ZNF705EA8MWA4 302 aaPredicted RBP12.59□□□□□ -0.39
USP4-203ENST00000415188 J3QT63 122 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 GPR31O00270 319 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 TUSC2O75896 110 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 NGFP01138 241 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 MBPP02686 304 aaPredicted RBP12.59□□□□□ -0.39
USP4-203ENST00000415188 GLI4P10075 376 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 CCL2P13500 99 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 IGFBP2P18065 325 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 IL32P24001 234 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 WNT5AP41221 380 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 KCNJ3P48549 501 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 ZNF273Q14593 569 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 TBC1D28Q2M2D7 210 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 RPL7L1Q6DKI1 246 aaKnown RBP12.59□□□□□ -0.39
USP4-203ENST00000415188 FBXW12Q6X9E4 464 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 ZNF565Q8N9K5 539 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.59□□□□□ -0.39
USP4-203ENST00000415188 UBAC2Q8NBM4 344 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 OR5T2Q8NGG2 359 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 ARV1Q9H2C2 271 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 MTCH1Q9NZJ7 389 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 FBXL17Q9UF56 701 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 ATP23Q9Y6H3 246 aa12.59□□□□□ -0.39
USP4-203ENST00000415188 C3orf85A0A1B0GTC6 90 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 ST8SIA3O43173 380 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 PHF1O43189 567 aaPredicted RBP12.58□□□□□ -0.4
USP4-203ENST00000415188 HOXB1P14653 301 aaPredicted RBP12.58□□□□□ -0.4
USP4-203ENST00000415188 MDH2P40926 338 aaKnown RBP12.58□□□□□ -0.4
USP4-203ENST00000415188 TGFBR3Q03167 851 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 TLE4Q04727 773 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 SP6Q3SY56 376 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 C10orf91Q5T1B1 145 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 ZNF880Q6PDB4 577 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 MOB1BQ7L9L4 216 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 MDP1Q86V88 176 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 Q8IYB0 196 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 C14orf79Q96F83 325 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 LRRC46Q96FV0 321 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 TMEM56Q96MV1 263 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 MICU1Q9BPX6 476 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 TMEM222Q9H0R3 208 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 KCNJ16Q9NPI9 418 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 OR2S2Q9NQN1 319 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 PARP11Q9NR21 331 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 CRIM1Q9NZV1 1036 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 CARHSP1Q9Y2V2 147 aaKnown RBP12.58□□□□□ -0.4
USP4-203ENST00000415188 TMEM56-RWDD3S4R434 201 aa12.58□□□□□ -0.4
USP4-203ENST00000415188 TEP1Q99973 2627 aaKnown RBP12.57□□□□□ -0.4
USP4-203ENST00000415188 A0A0G2JNJ9 132 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 ATG12O94817 140 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 CNOT4O95628 575 aaKnown RBP12.57□□□□□ -0.4
USP4-203ENST00000415188 SCGB1D2O95969 90 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 WNT2P09544 360 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 PRKACAP17612 351 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 S100GP29377 79 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 TMEM33P57088 247 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 PDCD1Q15116 288 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 MST1LQ2TV78 715 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 C1orf185Q5T7R7 199 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 HAGHLQ6PII5 290 aaPredicted RBP12.57□□□□□ -0.4
USP4-203ENST00000415188 P4HA3Q7Z4N8 544 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 LYZL2Q7Z4W2 148 aa12.57□□□□□ -0.4
USP4-203ENST00000415188 FOXRED2Q8IWF2 684 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms