RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SCIMPQ6UWF3 145 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 CDC20BQ86Y33 519 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 OR8G5Q8NG78 346 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 OR51G1Q8NGK1 321 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 GTSF1Q8WW33 167 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 CHCHD10Q8WYQ3 142 aaPredicted RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 TMEM54Q969K7 222 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 FLYWCH2Q96CP2 140 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 PPP3R2Q96LZ3 170 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 Q96MT0 163 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 RASL11BQ9BPW5 248 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 SRMSQ9H3Y6 488 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 ZNF556Q9HAH1 456 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 LHX9Q9NQ69 397 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 IMPAD1Q9NX62 359 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 VNN3Q9NY84 501 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 ZNF107Q9UII5 783 aaPredicted RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 NCKAP5O14513 1909 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 TLN1Q9Y490 2541 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 FN1P02751 2386 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 LRBAP50851 2863 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 CACNA1CQ13936 2221 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 SPTAN1Q13813 2472 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 BBIP1A8MTZ0 92 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 C12orf77C9JDV5 145 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 MRASO14807 208 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 SLC16A7O60669 478 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 POP7O75817 140 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 SOD1P00441 154 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 IGLV1-44P01699 117 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 CSF3P09919 207 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 COX7A1P24310 79 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 CCKARP32238 428 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 ARR3P36575 388 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 ACTR1BP42025 376 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 GPR6P46095 362 aaPredicted RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 CD47Q08722 323 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 NRF1Q16656 503 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 C17orf58Q2M2W7 97 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 FBXL19-AS1Q494R0 122 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 SLC36A2Q495M3 483 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 PGAM4Q8N0Y7 254 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 HGDQ93099 445 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 SGTBQ96EQ0 304 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 C1orf50Q9BV19 199 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 SLIRPQ9GZT3 109 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 GID8Q9NWU2 228 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 BTNL2Q9UIR0 455 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 RNF11Q9Y3C5 154 aa1.95□□□□□ -2.1
MCF2-204ENST00000414978 YLPM1P49750 1951 aaKnown RBP1.95□□□□□ -2.1
MCF2-204ENST00000414978 SPG11Q96JI7 2443 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 OR6C70A6NIJ9 312 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 MANBAO00462 879 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 GALR3O60755 368 aaPredicted RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 MOSP00540 346 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 TCRBP04435 133 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 GNAO1P09471 354 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 CEACAM6P40199 344 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 NKX2-5P52952 324 aaPredicted RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 DIO3P55073 304 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 RPL31P62899 125 aaKnown RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 EMX2Q04743 252 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 FAM53BQ14153 422 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 SPCS2Q15005 226 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 IRF4Q15306 451 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 ATP6AP1Q15904 470 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 AGTRAPQ6RW13 159 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 HSD17B13Q7Z5P4 300 aaPredicted RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 RIMKLAQ8IXN7 391 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 OR9I1Q8NGQ6 314 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 TMEM239Q8WW34 195 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 KLK6Q92876 244 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 SRRQ9GZT4 340 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 ING2Q9H160 280 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 LRTM1Q9HBL6 345 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 CIDEBQ9UHD4 219 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 ZNF225Q9UK10 706 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 ASF1AQ9Y294 204 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 NDUFAF1Q9Y375 327 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 BIRC6Q9NR09 4857 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 LOC400499M0QZD8 3231 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 MPTX1A8MV57 137 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 KRTAP4-16G5E9R7 235 aaPredicted RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 SLC31A1O15431 190 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 CRTAPO75718 401 aaPredicted RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 PSMG1O95456 288 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 CRHP06850 196 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 ME2P23368 584 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 ERFP50548 548 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 POLR2JP52435 117 aaKnown RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 PSME3P61289 254 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 RPL38P63173 70 aaKnown RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 HMGCS1Q01581 520 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 DYNC1I2Q13409 638 aaKnown RBP1.94□□□□□ -2.1
MCF2-204ENST00000414978 APOFQ13790 326 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 FLOT2Q14254 428 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 GNMTQ14749 295 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 FAHD1Q6P587 224 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 SPESP1Q6UW49 350 aa1.94□□□□□ -2.1
MCF2-204ENST00000414978 RNF165Q6ZSG1 346 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms