RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CTLA4P16410 223 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 GFERP55789 205 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 VN1R4Q7Z5H5 301 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SHISA5Q8N114 240 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 DYRK2Q92630 601 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 WDR13Q9H1Z4 485 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 MIXL1Q9H2W2 232 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 PPP1R3EQ9H7J1 279 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ZMIZ1Q9ULJ6 1067 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 A0A1W2PNV4 684 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LOC390937A0A1W2PQ73 354 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 H3BP45 60 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 IGHV3-9P01782 118 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 C1QAP02745 245 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 CA6P23280 308 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 RPS11P62280 158 aaKnown RBP eCLIP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 POLR2GP62487 172 aaKnown RBP eCLIP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 FZD5Q13467 585 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM255AQ5JRV8 349 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 FAM27D1Q5T7N8 215 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF788Q6ZQV5 615 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 MMD2Q8IY49 270 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ELOVL1Q9BW60 279 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LPAR5Q9H1C0 372 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 RALYQ9UKM9 306 aaKnown RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 DMRT1Q9Y5R6 373 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SCN7AQ01118 1682 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 TRGV8A0A0C4DH27 118 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 TCRBV16S1A1N1A0A5B0 115 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 WNT9BO14905 357 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 PTP4A3O75365 173 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 OR2A4O95047 310 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF735P0CB33 412 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ACAA2P42765 397 aaKnown RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 CIRBPQ14011 172 aaKnown RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 MESTQ5EB52 335 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 RIPPLY2Q5TAB7 128 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 WDR31Q8NA23 367 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF519Q8TB69 540 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 GALNT14Q96FL9 552 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SFRP2Q96HF1 295 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 OR2A7Q96R45 310 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 C20orf141Q9NUB4 165 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 FRRS1LQ9P0K9 344 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 DIRC3C9JPN6 131 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SPRY3O43610 288 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 TTRP02766 147 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM11P17152 192 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 CTGFP29279 349 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 RBM11P57052 281 aaKnown RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 FGF12P61328 243 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LYZP61626 148 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LPAL2Q16609 132 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 Q6AWC8 147 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 MRPL37Q9BZE1 423 aaKnown RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ONECUT1Q9UBC0 465 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ST6GALNAC2Q9UJ37 374 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 ARAP2Q8WZ64 1704 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SNURFLB1AK76 121 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 DXOO77932 396 aaKnown RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 EDN3P14138 238 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 DEFB109BQ30KR1 87 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SP6Q3SY56 376 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 WIPI1Q5MNZ9 446 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LYPD8Q6UX82 237 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 OR4P4Q8NGL7 312 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 RND1Q92730 232 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SMIM12Q96EX1 92 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 LINC00052Q96N35 136 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 MOGAT1Q96PD6 335 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 CLEC5AQ9NY25 188 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 CCL27Q9Y4X3 112 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 DLL1O00548 723 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 CYR61O00622 381 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 PLA2G10O15496 165 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 CD1BP29016 333 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 CDAP32320 146 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 MVDP53602 400 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM50BP56557 158 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 KCNMB1Q16558 191 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 FAM181AQ8N9Y4 354 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 GPR35Q9HC97 309 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 F2RL2O00254 374 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 AMY1AP04745 511 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TRGC1P0CF51 173 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 FAM157CP0CG43 387 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TSPOP30536 169 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 SELENOPP49908 381 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TNXAQ16473 311 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TUSC1Q2TAM9 212 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 KRTCAP3Q53RY4 240 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TCF24Q7RTU0 167 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 OR2I1PQ8NGU4 316 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 OR4X1Q8NH49 305 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 ZCCHC14Q8WYQ9 949 aaKnown RBP5.34□□□□□ -1.55
SCN1A-203ENST00000409050 C8orf44Q96CB5 159 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 LOXL4Q96JB6 756 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 PAXXQ9BUH6 204 aa5.34□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM222Q9H0R3 208 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms