RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 THBS4P35443 961 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ARL3P36405 182 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CEACAM16Q2WEN9 425 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ATOH7Q8N100 152 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CYB561D1Q8N8Q1 229 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 MARS2Q96GW9 593 aaKnown RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CARHSP1Q9Y2V2 147 aaKnown RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 OBSL1O75147 1896 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SPEGQ15772 3267 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 TMEM210A6NLX4 147 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 BMPR1BO00238 502 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 HPRT1P00492 218 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF32P17041 273 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 KITLGP21583 273 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 GALNSP34059 522 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ERVFC1-1P60608 527 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 TGFBR3Q03167 851 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SPANXN5Q5MJ07 72 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SPATA46Q5T0L3 261 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF808Q8N4W9 903 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 TCTEX1D1Q8N7M0 179 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 PSMF1Q92530 271 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 SPACA9Q96E40 222 aaPredicted RBP10.41□□□□□ -0.74
HMGB1-206ENST00000405805 RARRES2Q99969 163 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 HSPB9Q9BQS6 159 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 CHST5Q9GZS9 411 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 DOCK10Q96BY6 2186 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 AKAP6Q13023 2319 aa10.41□□□□□ -0.74
HMGB1-206ENST00000405805 FIGNL2A6NMB9 653 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 DHRS3O75911 302 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 FAM78BQ5VT40 261 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 TRAPPC2LH3BP13 241 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 ADAM20O43506 726 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 TUSC2O75896 110 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 TIAF1O95411 115 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 ADCYAP1P18509 176 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 FSTP19883 344 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 PSMB3P49720 205 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 PMP22Q01453 160 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 ACOT6Q3I5F7 207 aaPredicted RBP10.4□□□□□ -0.74
HMGB1-206ENST00000405805 EIF4E3Q8N5X7 224 aaKnown RBP10.4□□□□□ -0.74
HMGB1-206ENST00000405805 OR2J1Q9GZK6 312 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 FAM234AQ9H0X4 552 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 MOB1AQ9H8S9 216 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 PLEKHA2Q9HB19 425 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 SLC2A8Q9NY64 477 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 MCTS1Q9ULC4 181 aaKnown RBP10.4□□□□□ -0.74
HMGB1-206ENST00000405805 RNF150Q9ULK6 438 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 AUP1Q9Y679 476 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 IGKV1D-8A0A087WSZ0 117 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 MRPL33O75394 65 aaKnown RBP10.4□□□□□ -0.74
HMGB1-206ENST00000405805 GCGP01275 180 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 TMEM267Q0VDI3 215 aaPredicted RBP10.4□□□□□ -0.74
HMGB1-206ENST00000405805 C5orf24Q7Z6I8 188 aa10.4□□□□□ -0.74
HMGB1-206ENST00000405805 A0A1B0GTI1 187 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF207O43670 478 aaKnown RBP10.4□□□□□ -0.75
HMGB1-206ENST00000405805 HKR1P10072 659 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 NXPH1P58417 271 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 CCL7P80098 99 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 PNLIPRP3Q17RR3 467 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 WIPI1Q5MNZ9 446 aaPredicted RBP10.4□□□□□ -0.75
HMGB1-206ENST00000405805 OSR2Q8N2R0 312 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 RASL10BQ96S79 203 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 WNT5BQ9H1J7 359 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 POMT1Q9Y6A1 747 aa10.4□□□□□ -0.75
HMGB1-206ENST00000405805 KIAA1671Q9BY89 1806 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 COL4A3Q01955 1670 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 A0A1W2PPV4 95 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 NKX2-6A6NCS4 301 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 HSBP1O75506 76 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 CLEC3BP05452 202 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF708P17019 499 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 TCN2P20062 427 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 FCER1GP30273 86 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 SSR4P51571 173 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF133P52736 654 aaPredicted RBP10.39□□□□□ -0.75
HMGB1-206ENST00000405805 TAS2R30P59541 319 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 LINC00696Q6ZRV3 163 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 OR52M1Q8NGK5 317 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 DPF1Q92782 380 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 C12orf49Q9H741 205 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 PI4KAP42356 2102 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 SPTBN1Q01082 2364 aaKnown RBP10.39□□□□□ -0.75
HMGB1-206ENST00000405805 PLCE1Q9P212 2302 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 A0A0A6YYD4 124 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 C5orf49A4QMS7 147 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 FAM166BA8MTA8 275 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 CLDN1O95832 211 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 DTYMKP23919 212 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 GPM6AP51674 278 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 UNQ6494/PRO21346Q6UXR6 183 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 NUDT10Q8NFP7 164 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 OR10J5Q8NHC4 309 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 NAT6Q93015 286 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 ZNF837Q96EG3 531 aaPredicted RBP10.39□□□□□ -0.75
HMGB1-206ENST00000405805 UTP23Q9BRU9 249 aaKnown RBP10.39□□□□□ -0.75
HMGB1-206ENST00000405805 CACNA1HO95180 2353 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 AADACP22760 399 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 WNT5AP41221 380 aa10.39□□□□□ -0.75
HMGB1-206ENST00000405805 TAAR9Q96RI9 348 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms