RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DOCK10Q96BY6 2186 aa17.96■□□□□ 0.46
CTCF-202ENST00000401394 TP53I11O14683 189 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 CLDN15P56746 228 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 ZFP36L1Q07352 338 aaKnown RBP17.95■□□□□ 0.46
CTCF-202ENST00000401394 WIPI1Q5MNZ9 446 aaPredicted RBP17.95■□□□□ 0.46
CTCF-202ENST00000401394 SP5Q6BEB4 398 aaPredicted RBP17.95■□□□□ 0.46
CTCF-202ENST00000401394 OR2H1Q9GZK4 316 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 UFSP2Q9NUQ7 469 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 ZNF503-AS2A6NEH8 195 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 CDS2O95674 445 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 BMP5P22003 454 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 TUBG1P23258 451 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 HLA-DRB3P79483 266 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 RTP5Q14D33 572 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 Q6ZSR3 168 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 AAED1Q7RTV5 226 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 FOXB1Q99853 325 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 RNF115Q9Y4L5 304 aa17.95■□□□□ 0.46
CTCF-202ENST00000401394 SEC14L6B5MCN3 397 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 ZNF16P17020 682 aaPredicted RBP17.94■□□□□ 0.46
CTCF-202ENST00000401394 NDUFB7P17568 137 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 ID3Q02535 119 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 TMEM42Q69YG0 159 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 ASCL4Q6XD76 172 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 GPR146Q96CH1 333 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 MTCH1Q9NZJ7 389 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 LY6G6EA0A0G2JKS1 128 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 HSPA12AO43301 675 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 NGFP01138 241 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 SRYQ05066 204 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 EXT1Q16394 746 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 ZNF506Q5JVG8 444 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 TMEM56Q96MV1 263 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 TMEM56-RWDD3S4R434 201 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 U3KQA8 63 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 OR6C6A6NF89 314 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 TK1P04183 234 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 GATAD1Q8WUU5 269 aa17.94■□□□□ 0.46
CTCF-202ENST00000401394 SNRPCP09234 159 aaKnown RBP17.93■□□□□ 0.46
CTCF-202ENST00000401394 OR1A1Q9P1Q5 309 aa17.93■□□□□ 0.46
CTCF-202ENST00000401394 SMG1Q96Q15 3661 aaKnown RBP17.93■□□□□ 0.46
CTCF-202ENST00000401394 COL8A2P25067 703 aa17.93■□□□□ 0.46
CTCF-202ENST00000401394 FUT6P51993 359 aa17.93■□□□□ 0.46
CTCF-202ENST00000401394 CARD18P57730 90 aa17.93■□□□□ 0.46
CTCF-202ENST00000401394 PRRG4Q9BZD6 226 aa17.93■□□□□ 0.46
CTCF-202ENST00000401394 Q9N2K0 584 aa17.93■□□□□ 0.46
CTCF-202ENST00000401394 PGLYRP1O75594 196 aaPredicted RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 CNOT4O95628 575 aaKnown RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 UCP3P55916 312 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 USF3Q68DE3 2245 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 A0A1B0GW64 132 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 OR5H1A6NKK0 313 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 ZNF732B4DXR9 585 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 HIST1H1BP16401 226 aaKnown RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 MRPL14Q6P1L8 145 aaKnown RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 HAPLN4Q86UW8 402 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 KMT5CQ86Y97 462 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 ZDHHC23Q8IYP9 409 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 OR5T1Q8NG75 326 aa17.92■□□□□ 0.46
CTCF-202ENST00000401394 ZNF552Q9H707 407 aaPredicted RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 AURKAIP1Q9NWT8 199 aaPredicted RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 ERRFI1Q9UJM3 462 aaPredicted RBP17.92■□□□□ 0.46
CTCF-202ENST00000401394 LOC102723971A0A1B0GUV8 181 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 CEBPZOSA8MTT3 80 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 PHOX2AO14813 284 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 DSCR4P56555 118 aaPredicted RBP17.91■□□□□ 0.46
CTCF-202ENST00000401394 TMEM211Q6ICI0 200 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 RNASE11Q8TAA1 199 aaKnown RBP17.91■□□□□ 0.46
CTCF-202ENST00000401394 HIST1H2BLQ99880 126 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 ELOVL1Q9BW60 279 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 SLC25A31Q9H0C2 315 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 PPP1R3CQ9UQK1 317 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 ZNF716A6NP11 495 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 RPL36A-HNRNPH2H7BZ11 118 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 HSPB1P04792 205 aaKnown RBP17.91■□□□□ 0.46
CTCF-202ENST00000401394 APLNRP35414 380 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 CLN3Q13286 438 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 POM121Q96HA1 1249 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 PACRGQ96M98 296 aaPredicted RBP17.91■□□□□ 0.46
CTCF-202ENST00000401394 ATP5SQ99766 215 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 ZNF576Q9H609 170 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 BOD1L1Q8NFC6 3051 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 IGHV1-45A0A0A0MS14 117 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 GATCO43716 136 aaKnown RBP17.91■□□□□ 0.46
CTCF-202ENST00000401394 TAS2R30P59541 319 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 ERVS71-1P61550 626 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 ZNF787Q6DD87 383 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 CADM4Q8NFZ8 388 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 OR10D3Q8NH80 312 aa17.91■□□□□ 0.46
CTCF-202ENST00000401394 MED12LQ86YW9 2145 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 CEP192Q8TEP8 1941 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 IGKV1-39P01597 117 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 IGKV1D-39P04432 117 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 COX6A1P12074 109 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 VDAC1P21796 283 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 GGNQ86UU5 652 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 C10orf35Q96D05 121 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 RBKSQ9H477 322 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 PLK3Q9H4B4 646 aa17.9■□□□□ 0.46
CTCF-202ENST00000401394 GFOD1Q9NXC2 390 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms