RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TPST1O60507 370 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 LMX1BO60663 402 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 POP7O75817 140 aaKnown RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 MOSP00540 346 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CSF3P09919 207 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TCN2P20062 427 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 FMO3P31513 532 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CD70P32970 193 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 PSMD8P48556 350 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SERPINB10P48595 397 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 AKR1D1P51857 326 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TAS2R43P59537 309 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM128Q5BJH2 165 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ACSBG2Q5FVE4 666 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 RNASE10Q5GAN6 216 aaKnown RBP3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TTC32Q5I0X7 151 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TCTEX1D4Q5JR98 221 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CLEC12AQ5QGZ9 265 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 C9orf66Q5T8R8 295 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 C1orf195Q5TG92 126 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 STPG1Q5TH74 334 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SFXN4Q6P4A7 337 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 OAFQ86UD1 273 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ZBTB8OSQ8IWT0 167 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 WDSUB1Q8N9V3 476 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ST6GALNAC3Q8NDV1 305 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 GPR26Q8NDV2 337 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 OR10G9Q8NGN4 311 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 BLNKQ8WV28 456 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 IL22RA2Q969J5 263 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SMARCD1Q96GM5 515 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 FOPNLQ96NB1 174 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 CCDC32Q9BV29 185 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SUCNR1Q9BXA5 334 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 MS4A8Q9BY19 250 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 OR51E2Q9H255 320 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TAS2R5Q9NYW4 299 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 ARMCX1Q9P291 453 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 SLC25A15Q9Y619 301 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM131LA2VDJ0 1609 aa3.13□□□□□ -1.91
HMGB1-204ENST00000399489 PXDNQ92626 1479 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 ABCC5O15440 1437 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 A0A1B0GXF2 115 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 CCDC160A6NGH7 325 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 G3V2T6 193 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 CYB5BO43169 146 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 HTR1AP08908 422 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 MYL12AP19105 171 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 PSMB9P28065 219 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 LGALS7P47929 136 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 RBP2P50120 134 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 CKS1BP61024 79 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 RPS23P62266 143 aaKnown RBP3.12□□□□□ -1.91
HMGB1-204ENST00000399489 HPCAP84074 193 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 GTF2BQ00403 316 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 KIAA0087Q14695 138 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 RSU1Q15404 277 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 SNRNP35Q16560 246 aaKnown RBP3.12□□□□□ -1.91
HMGB1-204ENST00000399489 KRTAP24-1Q3LI83 254 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 TMEM255AQ5JRV8 349 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 LCN12Q6JVE5 192 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 TEX43Q6ZNM6 134 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 TCF24Q7RTU0 167 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 C4orf32Q8N8J7 132 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF439Q8NDP4 499 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 VN1R17PQ8TDU5 208 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 C14orf144Q96I85 54 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 GMPPAQ96IJ6 420 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-204ENST00000399489 SLC45A3Q96JT2 553 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 RTBDNQ9BSG5 229 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-204ENST00000399489 DOK5Q9P104 306 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 COPZ2Q9P299 210 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 PCNTO95613 3336 aa3.12□□□□□ -1.91
HMGB1-204ENST00000399489 MYOM3Q5VTT5 1437 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 SMG6Q86US8 1419 aaKnown RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 NRXN3Q9Y4C0 1643 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 FAM172BPA6NC97 362 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ARL5CA6NH57 179 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 FAM159BA6NKW6 160 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 TRAPPC2LH3BP13 241 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF780AO75290 641 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 REM1O75628 298 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 OR7C1O76099 320 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 SUPT7LO94864 414 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF25P17030 456 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ATF1P18846 271 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 PRSS3P35030 304 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 MAP2K4P45985 399 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 REG1BP48304 166 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 LINC01547P58512 204 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-204ENST00000399489 TPI1P60174 286 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 HBG1P69891 147 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 HBG2P69892 147 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF616Q08AN1 781 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 TNFAIP8L3Q5GJ75 292 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 OR2B11Q5JQS5 317 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ZNF506Q5JVG8 444 aa3.11□□□□□ -1.91
HMGB1-204ENST00000399489 ATAD3CQ5T2N8 411 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms