RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MMP9P14780 707 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 SPINK2P20155 84 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 CDX1P47902 265 aaPredicted RBP10.86□□□□□ -0.67
SHMT1-205ENST00000395684 NDUFA6P56556 154 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 TAS2R30P59541 319 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 OR5D13Q8NGL4 314 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 ATP5SQ99766 215 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 PRDM6Q9NQX0 595 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 CELSR3Q9NYQ7 3312 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 PINLYPA6NC86 204 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 F10P00742 488 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 FOLR3P41439 243 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 RPL23AP62750 156 aaKnown RBP10.86□□□□□ -0.67
SHMT1-205ENST00000395684 IZUMO4Q1ZYL8 232 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF674Q2M3X9 581 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 NEK7Q8TDX7 302 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 TVP23CQ96ET8 276 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 NIPSNAP3BQ9BS92 247 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 PRRG4Q9BZD6 226 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 HIPK2Q9H2X6 1198 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 TCFL5Q9UL49 500 aa10.86□□□□□ -0.67
SHMT1-205ENST00000395684 KIAA1324LA8MWY0 1029 aaPredicted RBP10.85□□□□□ -0.67
SHMT1-205ENST00000395684 H0Y980 276 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 WRBO00258 174 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 FOXG1P55316 489 aaPredicted RBP10.85□□□□□ -0.67
SHMT1-205ENST00000395684 TLE4Q04727 773 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 IL24Q13007 206 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 CEACAM21Q3KPI0 293 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 PYY3Q5JQD4 70 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 THNSL2Q86YJ6 484 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 RBMXL1Q96E39 390 aaKnown RBP10.85□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF407Q9C0G0 2248 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 KIR2DS1A0A191URI9 304 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 C5orf49A4QMS7 147 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF503-AS2A6NEH8 195 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 SYNGR1O43759 233 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 HLA-HP01893 362 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 RD3LP0DJH9 198 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 F2RP25116 425 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 KIR2DS4P43632 304 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 RAB2AP61019 212 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 ARF1P84077 181 aaKnown RBP10.85□□□□□ -0.67
SHMT1-205ENST00000395684 KIR2DS1Q14954 304 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 Q6ZRM9 215 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 GPR146Q96CH1 333 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 PILRBQ9UKJ0 227 aa10.85□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BKO60814 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BJP06899 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BOP23527 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BBP33778 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 GLIPR1P48060 266 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 GFRA1P56159 465 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BDP58876 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BCP62807 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST2H2BEQ16778 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 KHDC3LQ587J8 217 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 CDPF1Q6NVV7 123 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 SPNS3Q6ZMD2 512 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 ZDHHC23Q8IYP9 409 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 SAXO1Q8IYX7 474 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF610Q8N9Z0 462 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 MRPL30Q8TCC3 161 aaKnown RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BHQ93079 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 IL22RA2Q969J5 263 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF488Q96MN9 340 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BNQ99877 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 HIST1H2BMQ99879 126 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF552Q9H707 407 aaPredicted RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 FREM1Q5H8C1 2179 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 CXorf65A6NEN9 183 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 NTN3O00634 580 aaPredicted RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 MRPL33O75394 65 aaKnown RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 NGFP01138 241 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 CTXN2P0C2S0 81 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 GDF1P27539 372 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 ZFP36L1Q07352 338 aaKnown RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 TMEM267Q0VDI3 215 aaPredicted RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 RNPS1Q15287 305 aaKnown RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 MPV17LQ2QL34 196 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 PPP1R32Q7Z5V6 425 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 SLC35E3Q7Z769 313 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 OR51H1Q8NH63 302 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 RSG1Q9BU20 258 aa10.84□□□□□ -0.67
SHMT1-205ENST00000395684 NOSIPQ9Y314 301 aaKnown RBP10.84□□□□□ -0.67
SHMT1-205ENST00000395684 LOC102723971A0A1B0GUV8 181 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 TRAPPC2LH3BP13 241 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 HS3ST1O14792 307 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 CYB5BO43169 146 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 PSG2P11465 335 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 OTX2P32243 289 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 OR8G1Q15617 311 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 ZNF324BQ6AW86 544 aaPredicted RBP10.83□□□□□ -0.68
SHMT1-205ENST00000395684 DPPA3Q6W0C5 159 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 VSIRQ9H7M9 311 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 GNG13Q9P2W3 67 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 HBE1P02100 147 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 TRGC2P03986 189 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 HLA-DRB3P79483 266 aa10.83□□□□□ -0.68
SHMT1-205ENST00000395684 NRN1LQ496H8 165 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms