RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CHCHD6Q9BRQ6 235 aa17.63■□□□□ 0.41
CLN3-207ENST00000395653 NICN1Q9BSH3 213 aa17.63■□□□□ 0.41
CLN3-207ENST00000395653 CHIAQ9BZP6 476 aa17.63■□□□□ 0.41
CLN3-207ENST00000395653 KIAA2026Q5HYC2 2103 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 LDLRAD4O15165 306 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 GADD45AP24522 165 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 AANATQ16613 207 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 NKAPLQ5M9Q1 402 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 BAIAP2L2Q6UXY1 529 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 LHFPL4Q7Z7J7 247 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 FAM89BQ8N5H3 189 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 MALSU1Q96EH3 234 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 TNFRSF19Q9NS68 423 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 IDI2-AS1Q9NZ38 188 aa17.62■□□□□ 0.41
CLN3-207ENST00000395653 STAB1Q9NY15 2570 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 A0A0A6YYD4 124 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 TRAV39A0A0B4J263 110 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 UBE2QL1A1L167 161 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 BTBD17A6NE02 478 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 JUNBP17275 347 aaPredicted RBP17.61■□□□□ 0.41
CLN3-207ENST00000395653 SSTR5P35346 364 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 MINOS1Q5TGZ0 78 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 NR2C2APQ86WQ0 139 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 OR5R1Q8NH85 324 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 ZNF596Q8TC21 504 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 CCDC107Q8WV48 283 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 DYRK2Q92630 601 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 ZNF286AQ9HBT8 521 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 MINOS1-NBL1R4GNA1 71 aa17.61■□□□□ 0.41
CLN3-207ENST00000395653 TMEM89A2RUT3 159 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 ORC5O43913 435 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 IGLV1-47P01700 117 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 BLVRBP30043 206 aaPredicted RBP17.6■□□□□ 0.41
CLN3-207ENST00000395653 TIMM50Q3ZCQ8 353 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 LDLRAD2Q5SZI1 272 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 GDPGP1Q6ZNW5 385 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 OR4P4Q8NGL7 312 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 SULT4A1Q9BR01 284 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 TRAPPC2LQ9UL33 140 aa17.6■□□□□ 0.41
CLN3-207ENST00000395653 LOC100506127A0A0U1RQW1 187 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 TMEM272A0A1B0GTI8 110 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 FAM172BPA6NC97 362 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 NOTOA8MTQ0 251 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 C15orf65H3BRN8 121 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 HKR1P10072 659 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 NFYBP25208 207 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 RPL15P61313 204 aaKnown RBP17.59■□□□□ 0.41
CLN3-207ENST00000395653 LRRC75BQ2VPJ9 315 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 C6orf183Q5T699 404 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 TRAT1Q6PIZ9 186 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 C6orf201Q7Z4U5 140 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 OR4K15Q8NH41 348 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 RFESDQ8TAC1 157 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 GCDHQ92947 438 aaPredicted RBP17.59■□□□□ 0.41
CLN3-207ENST00000395653 SSX3Q99909 188 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 LIN7BQ9HAP6 207 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 VPREB3Q9UKI3 123 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 RAB22AQ9UL26 194 aa17.59■□□□□ 0.41
CLN3-207ENST00000395653 FOXI3A8MTJ6 420 aaPredicted RBP17.58■□□□□ 0.41
CLN3-207ENST00000395653 HTR1DP28221 377 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 FAM189A2Q15884 450 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 SLC16A12Q6ZSM3 486 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 OR9G1Q8NH87 305 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 NDNFQ8TB73 568 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 ARL11Q969Q4 196 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 YIPF6Q96EC8 236 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 CYYR1Q96J86 154 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 FAAP24Q9BTP7 215 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 CENPOQ9BU64 300 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 RAB9BQ9NP90 201 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 MBNL3Q9NUK0 354 aaKnown RBP17.58■□□□□ 0.41
CLN3-207ENST00000395653 HSF4Q9ULV5 492 aa17.58■□□□□ 0.41
CLN3-207ENST00000395653 FAM181BA6NEQ2 426 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 VGLL3A8MV65 326 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 C12orf77C9JDV5 145 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 TOR1AO14656 332 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 SOCS1O15524 211 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 SDC2P34741 201 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 COMPP49747 757 aaPredicted RBP17.57■□□□□ 0.4
CLN3-207ENST00000395653 PRRX1P54821 245 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 SSX2Q16385 188 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 HLA-DRB5Q30154 266 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 ZNF554Q86TJ5 538 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 DYNAPQ8N1N2 210 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 OR56B1Q8NGI3 324 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 OR52M1Q8NGK5 317 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 MRPL30Q8TCC3 161 aaKnown RBP17.57■□□□□ 0.4
CLN3-207ENST00000395653 CREB3L1Q96BA8 519 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 RNF167Q9H6Y7 350 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 PLEKHJ1Q9NW61 149 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 DPM3Q9P2X0 92 aa17.57■□□□□ 0.4
CLN3-207ENST00000395653 SMIM30A4D0T7 59 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 H3BUX3 64 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 F2RL2O00254 374 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 GPR137BO60478 399 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 RAB6AP20340 208 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 PAX6P26367 422 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 VEGFCP49767 419 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 LTC4SQ16873 150 aa17.56■□□□□ 0.4
CLN3-207ENST00000395653 UTF1Q5T230 341 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms