RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IGKV1-6A0A0C4DH72 117 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 TRDCB7Z8K6 153 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 MPIG6BO95866 241 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 GDNFP39905 211 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 GLIPR1P48060 266 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 IKZF1Q13422 519 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 TAF9Q16594 264 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 KLK9Q2XQG4 91 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 PAN3Q58A45 887 aaKnown RBP5.71□□□□□ -1.49
LIMA1-202ENST00000394943 BTNL3Q6UXE8 466 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 MFSD4AQ8N468 514 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 PLGRKTQ9HBL7 147 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 CALYQ9NYX4 217 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 KLK9Q9UKQ9 250 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 CENPEQ02224 2701 aa5.71□□□□□ -1.49
LIMA1-202ENST00000394943 A0A0B4J203 849 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 LANCL1O43813 399 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 PAHP00439 452 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 RPL31P62899 125 aaKnown RBP5.71□□□□□ -1.5
LIMA1-202ENST00000394943 HERPUD1Q15011 391 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 DMRTC1Q5HYR2 192 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF833PQ6ZTB9 187 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 H1FOOQ8IZA3 346 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-202ENST00000394943 TRIM63Q969Q1 353 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 S100A16Q96FQ6 103 aaKnown RBP5.71□□□□□ -1.5
LIMA1-202ENST00000394943 AGMATQ9BSE5 352 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 TMEM133Q9H2Q1 129 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 HIF1ANQ9NWT6 349 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 CDC42EP3Q9UKI2 254 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 NUP50Q9UKX7 468 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 KCNS2Q9ULS6 477 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 SPTBN1Q01082 2364 aaKnown RBP5.71□□□□□ -1.5
LIMA1-202ENST00000394943 TRGV10A0A0A0MS01 117 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 IGHV1-69DA0A0B4J2H0 117 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 C12orf77C9JDV5 145 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 IGHV1-69P01742 117 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 CTXN2P0C2S0 81 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 BLVRBP30043 206 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-202ENST00000394943 CLDN12P56749 244 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 IDNKQ5T6J7 187 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 C6orf201Q7Z4U5 140 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 IZUMO1Q8IYV9 350 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 SMIM4Q8WVI0 70 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 NEDD4LQ96PU5 975 aa5.71□□□□□ -1.5
LIMA1-202ENST00000394943 SDHCQ99643 169 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-202ENST00000394943 ABCA12Q86UK0 2595 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 A8MV72 311 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-202ENST00000394943 GABARAPH6UMI1 98 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 SIRPB1O00241 398 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 TFF1P04155 84 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 LPLP06858 475 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 UCP3P55916 312 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 CDNFQ49AH0 187 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 OR10K2Q6IF99 312 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 PYHIN1Q6K0P9 492 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 CNIH2Q6PI25 160 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 VMO1Q7Z5L0 202 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 LHFPL1Q86WI0 220 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 Q8N6K4 173 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 OR5T2Q8NGG2 359 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 OR4P4Q8NGL7 312 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 GIMAP1Q8WWP7 306 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 SNAPC3Q92966 411 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF251Q9BRH9 671 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 ETAA1Q9NY74 926 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 MTFP1Q9UDX5 166 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 RCVRNP35243 200 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 VEGFCP49767 419 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 AESQ08117 197 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF79Q15937 498 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 CNPY1Q3B7I2 92 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 FAM120AOSQ5T036 256 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 GDPD3Q7L5L3 318 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 Q8N2B8 174 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 TMEM229BQ8NBD8 167 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 C19orf18Q8NEA5 215 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 FAAP24Q9BTP7 215 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 PPA2Q9H2U2 334 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 DIABLOQ9NR28 239 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 KIF25Q9UIL4 384 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 AUP1Q9Y679 476 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 ITPR3Q14573 2671 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 TXNL1O43396 289 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 HPGDSO60760 199 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 IGLV2-14P01704 120 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 KIR2DS4P43632 304 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 KIR2DS1Q14954 304 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 MORN2Q502X0 79 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 ACTBL2Q562R1 376 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 OLFML2AQ68BL7 652 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 Q6YL49 198 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 OVCH2Q7RTZ1 564 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 OR4M1Q8NGD0 313 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 CFHR4Q92496 578 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 CREB3L1Q96BA8 519 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 CYYR1Q96J86 154 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 NKX3-1Q99801 234 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-202ENST00000394943 ELL3Q9HB65 397 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-202ENST00000394943 LPAR2Q9HBW0 351 aa5.7□□□□□ -1.5
LIMA1-202ENST00000394943 POMT1Q9Y6A1 747 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms