RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 PTX4Q96A99 478 aa10.33□□□□□ -0.76
NPHP4-202ENST00000378161 TRIP12Q14669 1992 aaPredicted RBP10.32□□□□□ -0.76
NPHP4-202ENST00000378161 KIR2DS5A0A0G2JLQ3 304 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 A0A0G2JNG1 304 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 KIR2DS3K7RE56 304 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 IER3P46695 156 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 EWSR1Q01844 656 aaKnown RBP eCLIP10.32□□□□□ -0.76
NPHP4-202ENST00000378161 KIR2DS5Q14953 304 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 PHLDA2Q53GA4 152 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 FGF13Q92913 245 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 PIMREGQ9BSJ6 248 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 ZNF665Q9H7R5 613 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 NRN1Q9NPD7 142 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 HSPB8Q9UJY1 196 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 MMP23AO75900 390 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 FAM87AP0C7U9 286 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 MTCP1P56278 107 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 PSG9Q00887 426 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 MPV17L2Q567V2 206 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 PLCXD3Q63HM9 321 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 OR1K1Q8NGR3 316 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 OR10AG1Q8NH19 301 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 MRPL18Q9H0U6 180 aaKnown RBP10.32□□□□□ -0.76
NPHP4-202ENST00000378161 CUTCQ9NTM9 273 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 PAX1P15863 534 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 GNG4P50150 75 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 CLRN1P58418 232 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 OR10G8Q8NGN5 311 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 ADAT3Q96EY9 351 aaPredicted RBP10.32□□□□□ -0.76
NPHP4-202ENST00000378161 DAPP1Q9UN19 280 aa10.32□□□□□ -0.76
NPHP4-202ENST00000378161 TRAV9-2A0A087WT02 112 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 SERINC4A6NH21 518 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 PIN1P1O15428 100 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 CD1AP06126 327 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 ZNF93P35789 620 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-202ENST00000378161 TMEM176BQ3YBM2 270 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-202ENST00000378161 ZNF542PQ5EBM4 170 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 OR5D14Q8NGL3 314 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 MRPL30Q8TCC3 161 aaKnown RBP10.31□□□□□ -0.76
NPHP4-202ENST00000378161 WDR76Q9H967 626 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 CYSLTR1Q9Y271 337 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 HCFC2Q9Y5Z7 792 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 TMEM265A0A087WTH1 108 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 IL18BPO95998 194 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 SLC35E2P0CK97 266 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 OR2A1Q8NGT9 310 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 RPS4Y2Q8TD47 263 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 MRPL24Q96A35 216 aaKnown RBP10.31□□□□□ -0.76
NPHP4-202ENST00000378161 KLK13Q9UKR3 277 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 EN2P19622 333 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-202ENST00000378161 RRADP55042 308 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 ROM1Q03395 351 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 TRMT12Q53H54 448 aaKnown RBP10.31□□□□□ -0.76
NPHP4-202ENST00000378161 CYP2G1PQ6ZSU1 146 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 ENY2Q9NPA8 101 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 LTBP1Q14766 1721 aa10.31□□□□□ -0.76
NPHP4-202ENST00000378161 C2orf72A6NCS6 295 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 CA2P00918 260 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 HIST1H1DP16402 221 aaKnown RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 PRICKLE4Q2TBC4 344 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 UNQ9370/PRO34162Q6UXP9 181 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 TMEFF1Q8IYR6 380 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 OR10G3Q8NGC4 313 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 LYRM4Q9HD34 91 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 AURKAIP1Q9NWT8 199 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 POLR2AP24928 1970 aaKnown RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 A0A0A6YYD5 115 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 RAD51DO75771 328 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 PTGER4P35408 488 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 CDKN2AP42771 156 aaKnown RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 SLC25A1P53007 311 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 PLAC9Q5JTB6 97 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ZNF595Q8IYB9 648 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 DIO2Q92813 273 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ST6GALNAC6Q969X2 333 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ZNF160Q9HCG1 818 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 NGBQ9NPG2 151 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 STARD5Q9NSY2 213 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 THAP10Q9P2Z0 257 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 TSSC4Q9Y5U2 329 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 SELENOKQ9Y6D0 94 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 TRAV8-7A0A075B6U6 113 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 LRRC3CA6NJW4 275 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 PPIAL4DF5H284 164 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 CD5LO43866 347 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 KBTBD11O94819 623 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ODF1Q14990 250 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 CEACAM21Q3KPI0 293 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 CD300EQ496F6 205 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 FAM78AQ5JUQ0 283 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ZNF784Q8NCA9 323 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 TEX50A0A1B0GTY4 177 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 NKX2-6A6NCS4 301 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ANOS1P23352 680 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 RPS18P62269 152 aaKnown RBP10.3□□□□□ -0.76
NPHP4-202ENST00000378161 CCL20P78556 96 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 GAGE5Q13069 117 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 GAGE6Q13070 117 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 ANKRD55Q3KP44 614 aa10.3□□□□□ -0.76
NPHP4-202ENST00000378161 SP6Q3SY56 376 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms