RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PATZ1Q9HBE1 687 aaKnown RBP10.05□□□□□ -0.8
SYNE1-204ENST00000367248 SF3B6Q9Y3B4 125 aaKnown RBP10.05□□□□□ -0.8
SYNE1-204ENST00000367248 URGCP-MRPS24S4R325 110 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 IGLV3-12A0A075B6K2 115 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 NPIPB9F8W1W9 429 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 PPYP01298 95 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 CEACAM21Q3KPI0 293 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 ETV3LQ6ZN32 361 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 HIST2H3AQ71DI3 136 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 MIXL1Q9H2W2 232 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 FSTP19883 344 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 CEBPDP49716 269 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-204ENST00000367248 SLC38A11Q08AI6 406 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 TCTE3Q8IZS6 198 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 NECAP1Q8NC96 275 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 OR1L4Q8NGR5 311 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 OR5R1Q8NH85 324 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 FKBP11Q9NYL4 201 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 ZNF727A8MUV8 499 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 GNG7O60262 68 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 MMP7P09237 267 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-204ENST00000367248 CCL28Q9NRJ3 127 aa10.05□□□□□ -0.8
SYNE1-204ENST00000367248 MGST3O14880 152 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 TGFAP01135 160 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 HLA-DRB3P79483 266 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 DCAF12L2Q5VW00 463 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 NBASA2RRP1 2371 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 LRRC3CA6NJW4 275 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 RPL36A-HNRNPH2H7BZ11 118 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 RBM11P57052 281 aaKnown RBP10.04□□□□□ -0.8
SYNE1-204ENST00000367248 LCN2P80188 198 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 EGR4Q05215 589 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 ZBTB37Q5TC79 503 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 PTX4Q96A99 478 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 ZMIZ1Q9ULJ6 1067 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 LHFPL6Q9Y693 200 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 UMAD1C9J7I0 102 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 ZG16O60844 167 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 COX5BP10606 129 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 VDAC1P21796 283 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 AKR1C3P42330 323 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 IL13RA2Q14627 380 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 LINC00596Q86U02 117 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 OR1B1Q8NGR6 318 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 RPUSD4Q96CM3 377 aaKnown RBP10.04□□□□□ -0.8
SYNE1-204ENST00000367248 R3HDM4Q96D70 268 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 ZNF107Q9UII5 783 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-204ENST00000367248 AUP1Q9Y679 476 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 TMEM229AB2RXF0 380 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 CLDN14O95500 239 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 CST4P01036 141 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 ETFRF1Q6IPR1 90 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 LSM2Q9Y333 95 aaKnown RBP10.04□□□□□ -0.8
SYNE1-204ENST00000367248 CD59P13987 128 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 PRDX2P32119 198 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 TMEM41BQ5BJD5 291 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 OR5B3Q8NH48 314 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 ZNF552Q9H707 407 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-204ENST00000367248 RNF24Q9Y225 148 aa10.04□□□□□ -0.8
SYNE1-204ENST00000367248 A0A1W2PRX2 142 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 FAM24AA6NFZ4 105 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 RPL35P42766 123 aaKnown RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 EFNB2P52799 333 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 LOXL3P58215 753 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 NUDT16L1Q9BRJ7 211 aaKnown RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 MARVELD1Q9BSK0 173 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 NPIPB13A6NJU9 1138 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 NPIPB4C9JG80 1138 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 ZFP36L1Q07352 338 aaKnown RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 GAPTQ8N292 157 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 ZNF680Q8NEM1 530 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 IL19Q9UHD0 177 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 TRBV5-5A0A0J9YX44 114 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 ADAP1O75689 374 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 SLC6A1P30531 599 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 RPUSD3Q6P087 351 aaKnown RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 HARBI1Q96MB7 349 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 SNRNP200O75643 2136 aaKnown RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 RAB19A4D1S5 217 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 TBX6O95947 436 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 CLEC18BQ6UXF7 455 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 OR2C3Q8N628 320 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 GP6Q9HCN6 339 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 V9GYH0 126 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 V9GYS6 101 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 ALPK2Q86TB3 2170 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 RGPD3A6NKT7 1758 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 CHEK1O14757 476 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 FBP1P09467 338 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 GNLYP22749 145 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 RXFP4Q8TDU9 374 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 ZNF331Q9NQX6 463 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 OR2W1Q9Y3N9 320 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 KIF13BQ9NQT8 1826 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 CENPVQ7Z7K6 275 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-204ENST00000367248 OR4F17Q8NGA8 305 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 PRDM14Q9GZV8 571 aa10.03□□□□□ -0.8
SYNE1-204ENST00000367248 ICMTO60725 284 aa10.02□□□□□ -0.8
SYNE1-204ENST00000367248 SNRPCP09234 159 aaKnown RBP10.02□□□□□ -0.8
SYNE1-204ENST00000367248 C10orf128Q5T292 105 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms