RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RNF150Q9ULK6 438 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 ATRQ13535 2644 aa7.67□□□□□ -1.18
USP4-202ENST00000351842 PLXNB1O43157 2135 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 LDLRAD4O15165 306 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 C1QBP02746 253 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 CD3DP04234 171 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 SCTP09683 121 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 ERP29P30040 261 aaKnown RBP7.66□□□□□ -1.18
USP4-202ENST00000351842 ERVK11-1P61568 191 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 BAMBIQ13145 260 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 NLRC3Q7RTR2 1065 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 OR56B4Q8NH76 319 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 MMP28Q9H239 520 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 ZNF665Q9H7R5 613 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 C19orf12Q9NSK7 152 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 H7C417 338 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 RP2O75695 350 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 RBBP9O75884 186 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 SLC6A1P30531 599 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 MDH2P40926 338 aaKnown RBP7.66□□□□□ -1.18
USP4-202ENST00000351842 PDLIM4P50479 330 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 DEFB113Q30KQ7 82 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 LRRC10Q5BKY1 277 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 Q5BKY6 102 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 UTF1Q5T230 341 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 FAHD2BQ6P2I3 314 aaPredicted RBP7.66□□□□□ -1.18
USP4-202ENST00000351842 BTN2A1Q7KYR7 527 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 OR13A1Q8NGR1 328 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 ARL11Q969Q4 196 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 FAHD2AQ96GK7 314 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 GAFA1Q96PS6 74 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 MMP26Q9NRE1 261 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 GHRLQ9UBU3 117 aa7.66□□□□□ -1.18
USP4-202ENST00000351842 TMEM127O75204 238 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 TK1P04183 234 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 HRH1P35367 487 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 GATA4P43694 442 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 GZMKP49863 264 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 CHRFAM7AQ494W8 412 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 ESCO2Q56NI9 601 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 MZT2BQ6NZ67 158 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 Q6P435 159 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 OR2W3Q7Z3T1 314 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 CIARTQ8N365 385 aaPredicted RBP7.65□□□□□ -1.18
USP4-202ENST00000351842 TOMM5Q8N4H5 51 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 BEST4Q8NFU0 473 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 CLDND2Q8NHS1 167 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 LURAP1Q96LR2 239 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 PIMREGQ9BSJ6 248 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 TINAGL1Q9GZM7 467 aaPredicted RBP7.65□□□□□ -1.18
USP4-202ENST00000351842 SHOXO15266 292 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 LYRM1O43325 122 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 ORC5O43913 435 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 SCO1O75880 301 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 CCR6P51684 374 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 ZNF273Q14593 569 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 PYHIN1Q6K0P9 492 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 OR1L1Q8NH94 360 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 GRPEL2Q8TAA5 225 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 COQ2Q96H96 371 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 CMTM3Q96MX0 182 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 SLC6A7Q99884 636 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 DNTTIP1Q9H147 329 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 ABCG5Q9H222 651 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 MYOZ1Q9NP98 299 aaPredicted RBP7.65□□□□□ -1.18
USP4-202ENST00000351842 GNG12Q9UBI6 72 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 BOLA1Q9Y3E2 137 aa7.65□□□□□ -1.18
USP4-202ENST00000351842 CUBNO60494 3623 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 C7orf66A4D0T2 115 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 SSX5O60225 188 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 KNG1P01042 644 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 LHBP01229 141 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 CHRM2P08172 466 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 CD55P08174 381 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 ZNF260Q3ZCT1 412 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 PRAMEF5Q5TYX0 476 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 STUMQ69YW2 141 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 OR8B3Q8NGG8 313 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 UPRTQ96BW1 309 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 OR8B2Q96RD0 313 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 GINS4Q9BRT9 223 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 TAF9BQ9HBM6 251 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 RANGRFQ9HD47 186 aaPredicted RBP7.65□□□□□ -1.19
USP4-202ENST00000351842 EHFQ9NZC4 300 aa7.65□□□□□ -1.19
USP4-202ENST00000351842 AKAP9Q99996 3911 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 TRAV6A0A075B6T7 132 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 OVOL3O00110 214 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 MFNGO00587 321 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 AMY2AP04746 511 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 IFNA6P05013 189 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 TMEM33P57088 247 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 TMED4Q7Z7H5 227 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 C14orf79Q96F83 325 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 SHARPINQ9H0F6 387 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 PARP12Q9H0J9 701 aaKnown RBP7.64□□□□□ -1.19
USP4-202ENST00000351842 H7C1Q1 480 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 FCN3O75636 299 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 MUC1P15941 1255 aaPredicted RBP7.64□□□□□ -1.19
USP4-202ENST00000351842 RAB6AP20340 208 aa7.64□□□□□ -1.19
USP4-202ENST00000351842 BTCP35070 178 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms