RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 LIMS3P0CW19 117 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 LIMS4P0CW20 117 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ACKR3P25106 362 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 RPS15P62841 145 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 PRSS8Q16651 343 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 C1orf100Q5SVJ3 147 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 SCGB1D4Q6XE38 83 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR2M7Q8NG81 312 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 RAB40CQ96S21 281 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 AGMATQ9BSE5 352 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MSRAQ9UJ68 235 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CNMDO75829 334 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MFGE8Q08431 387 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM69Q5SWH9 247 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 BPIFA4PQ86YQ2 179 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 NPWQ8N729 165 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR11G2Q8NGC1 345 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 OR10G9Q8NGN4 311 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TEPSINQ96N21 525 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FTSJ1Q9UET6 329 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 A0A096LPE4 126 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 A0A1W2PPZ6 126 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 CTSVO60911 334 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TIA1P31483 386 aaKnown RBP eCLIP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MED25Q71SY5 747 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 MRPL21Q7Z2W9 205 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 FAM19A2Q8N3H0 131 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 C11orf68Q9H3H3 251 aaKnown RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM140Q9NV12 185 aa3.13□□□□□ -1.91
SYNE1-201ENST00000341594 PHF1O43189 567 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 WIPI1Q5MNZ9 446 aaPredicted RBP3.13□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF724A8MTY0 619 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CD160O95971 181 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 OR10G8Q8NGN5 311 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SFXN1Q9H9B4 322 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF133P52736 654 aaPredicted RBP3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SGPP2Q8IWX5 399 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 MPPED1O15442 326 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 NEURL1O76050 574 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 BARHL1Q9BZE3 327 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM9BQ9NQ34 198 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CEBPZOSA8MTT3 80 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CFIP05156 583 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SP3Q02447 781 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CDRT4Q8N9R6 151 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF689Q96CS4 500 aaPredicted RBP3.12□□□□□ -1.91
SYNE1-201ENST00000341594 PIK3IP1Q96FE7 263 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TCTN2Q96GX1 697 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 FAM210BQ96KR6 192 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TNFSF18Q9UNG2 199 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 FCMRO60667 390 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ASIPP42127 132 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 IL13RA2Q14627 380 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 LCN12Q6JVE5 192 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SPNS3Q6ZMD2 512 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 OR10P1Q8NGE3 313 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 DAZAP1Q96EP5 407 aaKnown RBP3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM30AQ9NV96 361 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SLCO1C1Q9NYB5 712 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 MANSC4A6NHS7 340 aaPredicted RBP3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM262E9PQX1 116 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CTSEP14091 401 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 HOXA9P31269 272 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 GCSAMLQ5JQS6 135 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 PATE1Q8WXA2 126 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 HCFC2Q9Y5Z7 792 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF780BQ9Y6R6 833 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 LRRK2Q5S007 2527 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 K7EP13 123 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SLC37A1P57057 533 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 Q6ZVU0 165 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 LEAP2Q969E1 77 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 OR5D14Q8NGL3 314 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 OR1S1Q8NH92 325 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 MRGPRX2Q96LB1 330 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 MRGPRX1Q96LB2 322 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF331Q9NQX6 463 aaPredicted RBP3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TTC28Q96AY4 2481 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ANKRD20A5PA0PJZ0 165 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SCD5Q86SK9 330 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 OR11H7Q8NGC8 314 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 IGHV3-49A0A0A0MS15 119 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 J3QRE1 110 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 SFTA3P0C7M3 94 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 PSMB2P49721 201 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 GPNMBQ14956 572 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF584Q8IVC4 421 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF835Q9Y2P0 537 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 IER3P46695 156 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF74Q16587 644 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 ARSJQ5FYB0 599 aaPredicted RBP3.12□□□□□ -1.91
SYNE1-201ENST00000341594 GLMPQ8WWB7 406 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 UHRF2Q96PU4 802 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CMC2Q9NRP2 79 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 C2CD3Q4AC94 2353 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 TRBV11-1A0A0K0K1C0 115 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 CELA3AP09093 270 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 RPEL1Q2QD12 228 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 HFEQ30201 348 aa3.12□□□□□ -1.91
SYNE1-201ENST00000341594 BTNL8Q6UX41 500 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms