RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 SPIN3Q5JUX0 258 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 GPR157Q5UAW9 335 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 C20orf204Q6ZNR8 217 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 LINC00596Q86U02 117 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 ZNF573Q86YE8 665 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 GAPTQ8N292 157 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 C17orf78Q8N4C9 275 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 ZNF565Q8N9K5 539 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 ZCCHC14Q8WYQ9 949 aaKnown RBP12.76□□□□□ -0.37
TPM3-208ENST00000341485 STARD4Q96DR4 205 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 TMEM56Q96MV1 263 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 GPHA2Q96T91 129 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 OPN3Q9H1Y3 402 aaPredicted RBP12.76□□□□□ -0.37
TPM3-208ENST00000341485 PLK3Q9H4B4 646 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 PARP11Q9NR21 331 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 ATP23Q9Y6H3 246 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 TMEM56-RWDD3S4R434 201 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 FRYQ5TBA9 3013 aa12.76□□□□□ -0.37
TPM3-208ENST00000341485 CFAP47Q6ZTR5 3102 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 TRAV24A0A0B4J272 114 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 A0A1W2PR80 420 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 TOR1AO14656 332 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 CA6P23280 308 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 IL32P24001 234 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 IL24Q13007 206 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 GABRA6Q16445 453 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 Q6ZRG5 221 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 MYPOPQ86VE0 399 aaPredicted RBP12.75□□□□□ -0.37
TPM3-208ENST00000341485 SELENOHQ8IZQ5 122 aaKnown RBP12.75□□□□□ -0.37
TPM3-208ENST00000341485 FAM58AQ8N1B3 248 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 RPRMLQ8N4K4 120 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 ZNF610Q8N9Z0 462 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 SNRNP40Q96DI7 357 aaKnown RBP12.75□□□□□ -0.37
TPM3-208ENST00000341485 NRIP2Q9BQI9 281 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 OR51I2Q9H344 312 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 C11orf1Q9H5F2 150 aa12.75□□□□□ -0.37
TPM3-208ENST00000341485 UBE2J1Q9Y385 318 aaPredicted RBP12.75□□□□□ -0.37
TPM3-208ENST00000341485 HSD17B6O14756 317 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 HS3ST1O14792 307 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 RHBDL1O75783 438 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 F12P00748 615 aaPredicted RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 TIMP3P35625 211 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 GTF3AQ92664 365 aaKnown RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 RDH5Q92781 318 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 FAM122AQ96E09 287 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 SEC11CQ9BY50 192 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 PKIBQ9C010 78 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 SPACA1Q9HBV2 294 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 CCL28Q9NRJ3 127 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 TRBV6-6A0A0A6YYG2 114 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 CDS2O95674 445 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 CELA3BP08861 270 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 COX5AP20674 150 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 NHLH2Q02577 135 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 PRR30Q53SZ7 412 aaPredicted RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 PCSK4Q6UW60 755 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 BEND4Q6ZU67 534 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 ZNF695Q8IW36 515 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 CLRN3Q8NCR9 226 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 C1orf162Q8NEQ5 155 aaPredicted RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 LILRB1Q8NHL6 650 aaPredicted RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 GINS3Q9BRX5 216 aa12.74□□□□□ -0.37
TPM3-208ENST00000341485 RIMS4Q9H426 269 aaPredicted RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 PURGQ9UJV8 347 aaKnown RBP12.74□□□□□ -0.37
TPM3-208ENST00000341485 BORCS7-ASMTA0A0B4J1R7 106 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 RNASEK-C17orf49H0YIS7 233 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 AGPAT2O15120 278 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 CGAP01215 116 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 CTXN2P0C2S0 81 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 HOXB1P14653 301 aaPredicted RBP12.73□□□□□ -0.37
TPM3-208ENST00000341485 TBC1D28Q2M2D7 210 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 ZNF880Q6PDB4 577 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 CXorf67Q86X51 503 aaPredicted RBP12.73□□□□□ -0.37
TPM3-208ENST00000341485 LYPD6BQ8NI32 183 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 PARP12Q9H0J9 701 aaKnown RBP12.73□□□□□ -0.37
TPM3-208ENST00000341485 J3QT63 122 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 CD5P06127 495 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 OR8U9P0C7N5 309 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 SEC11BP0C7V7 166 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 ZNF14P17017 642 aaPredicted RBP12.73□□□□□ -0.37
TPM3-208ENST00000341485 F2RL1P55085 397 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 TMEM88Q6PEY1 159 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 WDR86Q86TI4 376 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 SPAG16Q8N0X2 631 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 OR8U1Q8NH10 309 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 FAM212BQ9NTI7 297 aaPredicted RBP12.73□□□□□ -0.37
TPM3-208ENST00000341485 SVILO95425 2214 aa12.73□□□□□ -0.37
TPM3-208ENST00000341485 C9JQL5 133 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 SPP1P10451 314 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 UCP1P25874 307 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 NPBWR1P48145 328 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 IDH3GP51553 393 aaPredicted RBP12.72□□□□□ -0.37
TPM3-208ENST00000341485 EWSR1Q01844 656 aaKnown RBP eCLIP12.72□□□□□ -0.37
TPM3-208ENST00000341485 RBPJQ06330 500 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 MRPL49Q13405 166 aaKnown RBP12.72□□□□□ -0.37
TPM3-208ENST00000341485 GNMTQ14749 295 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 SWI5Q1ZZU3 235 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 Q6P435 159 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 DOLPP1Q86YN1 238 aa12.72□□□□□ -0.37
TPM3-208ENST00000341485 BOD1Q96IK1 185 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms