RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 GAR1Q9NY12 217 aaKnown RBP8.7□□□□□ -1.02
USP54-201ENST00000339859 TIMM9Q9Y5J7 89 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 RALGAPA1Q6GYQ0 2036 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 ZNF785A8K8V0 405 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 SFT2D2O95562 160 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 CELA3BP08861 270 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 S100A1P23297 94 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 CD200P41217 278 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 PRR30Q53SZ7 412 aaPredicted RBP8.7□□□□□ -1.02
USP54-201ENST00000339859 NDFIP1Q9BT67 221 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 SLA2Q9H6Q3 261 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 CALYQ9NYX4 217 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 FANCMQ8IYD8 2048 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 hCG_38984A0A1B0GV85 526 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 HBZP02008 142 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 LCN2P80188 198 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 OR52L2PQ8NGH6 319 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 GNPNAT1Q96EK6 184 aaPredicted RBP8.7□□□□□ -1.02
USP54-201ENST00000339859 TMEM147Q9BVK8 224 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 GHITMQ9H3K2 345 aa8.7□□□□□ -1.02
USP54-201ENST00000339859 DNASE2O00115 360 aaPredicted RBP8.69□□□□□ -1.02
USP54-201ENST00000339859 GSTZ1O43708 216 aaPredicted RBP8.69□□□□□ -1.02
USP54-201ENST00000339859 ERVS71-1P61550 626 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ARF6P62330 175 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 LRRTM1Q86UE6 522 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 SRRQ9GZT4 340 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 WASHC3Q9Y3C0 194 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ODAMA1E959 279 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 FBXO24O75426 580 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 F2RP25116 425 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 B3GALT5-AS1P59052 145 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 SLC16A12Q6ZSM3 486 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 TBC1D26Q86UD7 250 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 EFNA4P52798 201 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 OR9G1Q8NH87 305 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 TMUB1Q9BVT8 246 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 MRPL37Q9BZE1 423 aaKnown RBP8.69□□□□□ -1.02
USP54-201ENST00000339859 NPIPB7O75200 414 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ACP7Q6ZNF0 438 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ZNF767PQ75MW2 155 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ZNF485Q8NCK3 441 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 OR1L6Q8NGR2 347 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 MRPL13Q9BYD1 178 aaKnown RBP8.69□□□□□ -1.02
USP54-201ENST00000339859 TM4SF5O14894 197 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 TGFAP01135 160 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 FCN2Q15485 313 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ECSCRQ19T08 205 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 CCDC190Q86UF4 302 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ABHD12Q8N2K0 398 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 ARV1Q9H2C2 271 aa8.69□□□□□ -1.02
USP54-201ENST00000339859 GABRB1P18505 474 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 FGF7P21781 194 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 P2RX3P56373 397 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 MBNL2Q5VZF2 373 aaKnown RBP8.68□□□□□ -1.02
USP54-201ENST00000339859 FAM213BQ8TBF2 198 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 LHX4Q969G2 390 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 RAB40CQ96S21 281 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 JPT1Q9UK76 154 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 LYPD3O95274 346 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 PPYP01298 95 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 PPP1CCP36873 323 aaKnown RBP8.68□□□□□ -1.02
USP54-201ENST00000339859 CEBPDP49716 269 aaPredicted RBP8.68□□□□□ -1.02
USP54-201ENST00000339859 ELLP55199 621 aaPredicted RBP8.68□□□□□ -1.02
USP54-201ENST00000339859 TMEM33P57088 247 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 LINC00303Q3SY05 128 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 POC1AQ8NBT0 407 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 DYNLRB2Q8TF09 96 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 ACTR3CQ9C0K3 210 aaPredicted RBP8.68□□□□□ -1.02
USP54-201ENST00000339859 TRBV5-7A0A0A0MS05 114 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 IGKV1D-43A0A0B4J1Z2 117 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 IL5P05113 134 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 AQP3Q92482 292 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 PRELID1Q9Y255 219 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 S100A9P06702 114 aaKnown RBP8.68□□□□□ -1.02
USP54-201ENST00000339859 NQO2P16083 231 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 PSMB6P28072 239 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 PSMB3P49720 205 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 CYB5R2Q6BCY4 276 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 HOGA1Q86XE5 327 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 OR2G3Q8NGZ4 309 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 WBP1Q96G27 269 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 LURAP1Q96LR2 239 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 AUP1Q9Y679 476 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 ALPK3Q96L96 1907 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 ANKRD20A5PA0PJZ0 165 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 SIX6O95475 246 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 FCGR3AP08637 254 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 ARL3P36405 182 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 PSG7Q13046 419 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 ZNF66Q6ZN08 573 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 SLC25A15Q9Y619 301 aa8.68□□□□□ -1.02
USP54-201ENST00000339859 CABIN1Q9Y6J0 2220 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 OBSL1O75147 1896 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 NDUFB6O95139 128 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 KLK2P20151 261 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 OR2B8PP59922 312 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 ZNF674Q2M3X9 581 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 ZNF645Q8N7E2 425 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 TMEM186Q96B77 213 aa8.67□□□□□ -1.02
USP54-201ENST00000339859 SH2D2AQ9NP31 389 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms