RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PPP1R3CQ9UQK1 317 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 IGSF10Q6WRI0 2623 aa12.96□□□□□ -0.33
LIMS1-202ENST00000338045 CACNA1BQ00975 2339 aa12.96□□□□□ -0.34
LIMS1-202ENST00000338045 CACNA1DQ01668 2161 aa12.96□□□□□ -0.34
LIMS1-202ENST00000338045 TMEM30CPA0ZSE6 113 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 TFF1P04155 84 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 TK1P04183 234 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 PGAM2P15259 253 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 RPS2P15880 293 aaKnown RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 GZMKP49863 264 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 NKX2-5P52952 324 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 P2RX3P56373 397 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 C2orf68Q2NKX9 166 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 ZNF672Q499Z4 452 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 NOXA1Q86UR1 476 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 ZCCHC24Q8N2G6 241 aaKnown RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 ZFAND1Q8TCF1 268 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 COQ2Q96H96 371 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 DLL4Q9NR61 685 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 PIPOXQ9P0Z9 390 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 TRAPPC2LQ9UL33 140 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 C14orf166Q9Y224 244 aaKnown RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 TRBV6-7A0A0A0MS04 114 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 NPIPB11E5RHQ5 1161 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 DIRAS3O95661 229 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 PPYP01298 95 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 GIPP09681 153 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 AADACP22760 399 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 NFYAP23511 347 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 SEC61A1P61619 476 aaKnown RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 POLR2GP62487 172 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 SUPT4H1P63272 117 aaKnown RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 HMGN3Q15651 99 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 SWI5Q1ZZU3 235 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 BOLLQ8N9W6 283 aaKnown RBP12.95□□□□□ -0.34
LIMS1-202ENST00000338045 EGLN1Q9GZT9 426 aa12.95□□□□□ -0.34
LIMS1-202ENST00000338045 IGHV3OR15-7A0A075B7D8 119 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 BET1O15155 118 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 SFT2D2O95562 160 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 ZNF728P0DKX0 622 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 HLA-GP17693 338 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 VAMP1P23763 118 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 CD34P28906 385 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 FAM201AQ5SY85 155 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 TEX36Q5VZQ5 186 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 NLRC3Q7RTR2 1065 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 PIK3IP1Q96FE7 263 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 SNX22Q96L94 193 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 PHB2Q99623 299 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 SAP30LQ9HAJ7 183 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 DYNLRB1Q9NP97 96 aa12.94□□□□□ -0.34
LIMS1-202ENST00000338045 SLC22A5O76082 557 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 CYB5R3P00387 301 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-202ENST00000338045 CD80P33681 288 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 H2BFSP57053 126 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 FXYD4P59646 89 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 HERV-K104P61576 105 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 AESQ08117 197 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 STUMQ69YW2 141 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 CLEC18BQ6UXF7 455 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 TGIF2LYQ8IUE0 185 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 ASCC1Q8N9N2 400 aaKnown RBP12.93□□□□□ -0.34
LIMS1-202ENST00000338045 UXS1Q8NBZ7 420 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 TOMM40LQ969M1 308 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 KIF25Q9UIL4 384 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 TRAV39A0A0B4J263 110 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 A0A0B4J2A0 478 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 DBX1A6NMT0 343 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 SMLR1H3BR10 107 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 IRF2P14316 349 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 MUC1P15941 1255 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-202ENST00000338045 ERP29P30040 261 aaKnown RBP12.93□□□□□ -0.34
LIMS1-202ENST00000338045 BPIFB3P59826 476 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 PPP1R35Q8TAP8 253 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 ASB13Q8WXK3 278 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 SDSLQ96GA7 329 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 KIRREL1Q96J84 757 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 RSRP1Q9BUV0 290 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 CLEC4MQ9H2X3 399 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-202ENST00000338045 TAF9BQ9HBM6 251 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 MBD2Q9UBB5 411 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 SHPKQ9UHJ6 478 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 MAB21L2Q9Y586 359 aa12.93□□□□□ -0.34
LIMS1-202ENST00000338045 CFAP46Q8IYW2 2715 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 DYSFO75923 2080 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 PKDREJQ9NTG1 2253 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 CRYM-AS1A6NIL9 109 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 LRRC30A6NM36 301 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 G3V3Q6 166 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 K7N7A8 449 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 GOSR2O14653 212 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 GABRA2P47869 451 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 RAP2BP61225 183 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 KRBOX4Q5JUW0 171 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 LY6G6FQ5SQ64 297 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 LPCAT3Q6P1A2 487 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 H1FOOQ8IZA3 346 aaPredicted RBP12.92□□□□□ -0.34
LIMS1-202ENST00000338045 MUC15Q8N387 334 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 ZNF561Q8N587 486 aa12.92□□□□□ -0.34
LIMS1-202ENST00000338045 OR10J5Q8NHC4 309 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms