RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 PUSL1Q8N0Z8 303 aaKnown RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 PLPPR1Q8TBJ4 325 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 OR1A1Q9P1Q5 309 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 TRAV17A0A0B4J275 112 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 NUDT19A8MXV4 375 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 J3QW42 95 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 SLC33A1O00400 549 aaPredicted RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 PGLYRP1O75594 196 aaPredicted RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 NXPH3O95157 252 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 GRPP07492 148 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 NKX2-1P43699 371 aaPredicted RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 HOXA4Q00056 320 aaPredicted RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 FOXF2Q12947 444 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 CXorf66Q5JRM2 361 aaPredicted RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 IGFL2Q6UWQ7 119 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 CMTM1Q8IZ96 169 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 TLNRD1Q9H1K6 362 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 ERRFI1Q9UJM3 462 aaPredicted RBP12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 OR2W1Q9Y3N9 320 aa12.61□□□□□ -0.39
CLCNKA-201ENST00000331433 MGAQ8IWI9 3026 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 UCP1P25874 307 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 CAV2P51636 162 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 ERVK11-1P61568 191 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 ZNF169Q14929 603 aaPredicted RBP12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 SMUG1Q53HV7 270 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 SH3BGRL3Q9H299 93 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 IFT22Q9H7X7 185 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 UQCC1Q9NVA1 299 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 TINAGQ9UJW2 476 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 FAM24AA6NFZ4 105 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 SSSCA1O60232 199 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 NXPH2O95156 264 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 RAC2P15153 192 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 INO80CQ6PI98 192 aaPredicted RBP12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 BTNL8Q6UX41 500 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 CXorf67Q86X51 503 aaPredicted RBP12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 H1FOOQ8IZA3 346 aaPredicted RBP12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 OR51H1Q8NH63 302 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 KLF14Q8TD94 323 aaPredicted RBP12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 BOD1Q96IK1 185 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 NRIP2Q9BQI9 281 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 ARV1Q9H2C2 271 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 POLDIP2Q9Y2S7 368 aa12.6□□□□□ -0.39
CLCNKA-201ENST00000331433 NBEAQ8NFP9 2946 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 BORCS7-ASMTA0A0B4J1R7 106 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 AQP7O14520 342 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 OR8U9P0C7N5 309 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 PGA5P0DJD9 388 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 CEBPDP49716 269 aaPredicted RBP12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 EWSR1Q01844 656 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 NMSQ5H8A3 153 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 SVBPQ8N300 66 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 HSD17B11Q8NBQ5 300 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 OR8U1Q8NH10 309 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 CABLES2Q9BTV7 478 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 C11orf1Q9H5F2 150 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 PARP11Q9NR21 331 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 IQCF6A8MYZ5 107 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 FHITP49789 147 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 OR8G1Q15617 311 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 SWI5Q1ZZU3 235 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 OR2C3Q8N628 320 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 WDR31Q8NA23 367 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 SPIN2AQ99865 258 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 SPIN2BQ9BPZ2 258 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 OBP2BQ9NPH6 170 aa12.59□□□□□ -0.39
CLCNKA-201ENST00000331433 PTPRBP23467 1997 aa12.58□□□□□ -0.39
CLCNKA-201ENST00000331433 CACNA1DQ01668 2161 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 IGSF23A1L1A6 192 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 H0Y980 276 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 C1QL1O75973 258 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 VDAC1P21796 283 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 OMGP23515 440 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 F2RP25116 425 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 HOXC12P31275 282 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 F2RL1P55085 397 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 CLINT1Q14677 625 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 TMEM88Q6PEY1 159 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 ZNF497Q6ZNH5 498 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 Q8IYB0 196 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 FAM212BQ9NTI7 297 aaPredicted RBP12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 OR14J1Q9UGF5 321 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 TRAPPC2LQ9UL33 140 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 FZR1Q9UM11 496 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 MAP1BP46821 2468 aaKnown RBP12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 MUC6Q6W4X9 2439 aa12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 ZFHX2Q9C0A1 2572 aaPredicted RBP12.58□□□□□ -0.4
CLCNKA-201ENST00000331433 TRIM77I1YAP6 450 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 C10orf91Q5T1B1 145 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 ZNF826PQ6ZT77 177 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 OR5D13Q8NGL4 314 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 SARAFQ96BY9 339 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 TAAR6Q96RI8 345 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 GINS3Q9BRX5 216 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 HEATR1Q9H583 2144 aaKnown RBP12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 RP1L1Q8IWN7 2480 aaPredicted RBP12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 A0A0G2JRQ6 117 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 MED19A0JLT2 244 aaPredicted RBP12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 C9JQL5 133 aa12.57□□□□□ -0.4
CLCNKA-201ENST00000331433 MLNRO43193 412 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms