RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 Q6ZPA2 131 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 RBMXL3Q8N7X1 1067 aaKnown RBP11.06□□□□□ -0.64
C9orf3-201ENST00000277198 ZNF565Q8N9K5 539 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 CPEB3Q8NE35 698 aaKnown RBP11.06□□□□□ -0.64
C9orf3-201ENST00000277198 HIST1H2BAQ96A08 127 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 C14orf79Q96F83 325 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 FER1L6-AS2Q96M78 137 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 C12orf57Q99622 126 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 PLK3Q9H4B4 646 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 SPACA1Q9HBV2 294 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 KCNJ16Q9NPI9 418 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 RPS10P5Q9NQ39 176 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 LYRM2Q9NU23 88 aaPredicted RBP11.06□□□□□ -0.64
C9orf3-201ENST00000277198 NOSIPQ9Y314 301 aaKnown RBP11.06□□□□□ -0.64
C9orf3-201ENST00000277198 UBE2J1Q9Y385 318 aaPredicted RBP11.06□□□□□ -0.64
C9orf3-201ENST00000277198 MED12Q93074 2177 aa11.06□□□□□ -0.64
C9orf3-201ENST00000277198 C7orf77A4D0Y5 90 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 ZNF587BE7ETH6 402 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 J3QKU1 62 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 TUSC2O75896 110 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 ZNF205O95201 554 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 VDAC1P21796 283 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 UCP1P25874 307 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 GDF1P27539 372 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 HABP2Q14520 560 aaPredicted RBP11.05□□□□□ -0.64
C9orf3-201ENST00000277198 TSC22D1Q15714 1073 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 AWAT1Q58HT5 328 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 MKXQ8IYA7 352 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 Q8NA96 180 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 APOBEC3DQ96AK3 386 aaPredicted RBP11.05□□□□□ -0.64
C9orf3-201ENST00000277198 CLCC1Q96S66 551 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 SLC7A10Q9NS82 523 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 EML6Q6ZMW3 1958 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 NKX2-6A6NCS4 301 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 S100A8P05109 93 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 AGAP20933 346 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 NPBWR2P48146 333 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 MEOX2P50222 304 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 KLRB1Q12918 225 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 IGSF11Q5DX21 431 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 MEX3BQ6ZN04 569 aaKnown RBP11.05□□□□□ -0.64
C9orf3-201ENST00000277198 TBC1D26Q86UD7 250 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 CMTM1Q8IZ96 169 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 SELENOHQ8IZQ5 122 aaKnown RBP11.05□□□□□ -0.64
C9orf3-201ENST00000277198 ABHD3Q8WU67 409 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 MALSU1Q96EH3 234 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 GNPNAT1Q96EK6 184 aaPredicted RBP11.05□□□□□ -0.64
C9orf3-201ENST00000277198 IP6K3Q96PC2 410 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 USB1Q9BQ65 265 aaKnown RBP11.05□□□□□ -0.64
C9orf3-201ENST00000277198 ATP23Q9Y6H3 246 aa11.05□□□□□ -0.64
C9orf3-201ENST00000277198 MYO7BQ6PIF6 2116 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 KIAA1549Q9HCM3 1950 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 TRBV6-6A0A0A6YYG2 114 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 WNT2P09544 360 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 SLC25A6P12236 298 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 MAS1LP35410 378 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 CTAG1AP78358 180 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 ID3Q02535 119 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 PRDX4Q13162 271 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 OR8G1Q15617 311 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 CLEC9AQ6UXN8 241 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 ZDHHC23Q8IYP9 409 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 HSD17B11Q8NBQ5 300 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 OR56B2PQ8NGI1 322 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 OR5A2Q8NGI9 324 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 THOC3Q96J01 351 aaKnown RBP11.04□□□□□ -0.64
C9orf3-201ENST00000277198 DEPPQ9NTK1 212 aa11.04□□□□□ -0.64
C9orf3-201ENST00000277198 RP1L1Q8IWN7 2480 aaPredicted RBP11.04□□□□□ -0.64
C9orf3-201ENST00000277198 C5orf52A6NGY3 159 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 ZNF732B4DXR9 585 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 SS18L1O75177 396 aaPredicted RBP11.03□□□□□ -0.64
C9orf3-201ENST00000277198 ZNF44P15621 663 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 S100GP29377 79 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 PRSS12P56730 875 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 VAMP2P63027 116 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 CLINT1Q14677 625 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 NMSQ5H8A3 153 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 DPPA3Q6W0C5 159 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 TMEM252Q8N6L7 170 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 OR5D13Q8NGL4 314 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 FAM173AQ9BQD7 235 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 PARP12Q9H0J9 701 aaKnown RBP11.03□□□□□ -0.64
C9orf3-201ENST00000277198 SH3BGRL3Q9H299 93 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 IFT22Q9H7X7 185 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 B4GALT7Q9UBV7 327 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 SLC22A20A6NK97 555 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 H0Y980 276 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 M0R036 132 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 UBE2CO00762 179 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 F10P00742 488 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 GLI4P10075 376 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 BCL3P20749 454 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 ARR3P36575 388 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 HAAOP46952 286 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 FHITP49789 147 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 ARF1P84077 181 aaKnown RBP11.03□□□□□ -0.64
C9orf3-201ENST00000277198 SPIN3Q5JUX0 258 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 MRPL21Q7Z2W9 205 aaKnown RBP11.03□□□□□ -0.64
C9orf3-201ENST00000277198 NAXEQ8NCW5 288 aa11.03□□□□□ -0.64
C9orf3-201ENST00000277198 OR2G3Q8NGZ4 309 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms