RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GRB2P62993 217 aaKnown RBP12.36□□□□□ -0.43
SDC1-201ENST00000254351 MALLQ13021 153 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 SPANXN5Q5MJ07 72 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 SLC25A26Q70HW3 274 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 OR4F5Q8NH21 305 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 LHX4Q969G2 390 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 RCC1LQ96I51 464 aaKnown RBP12.36□□□□□ -0.43
SDC1-201ENST00000254351 OR4F4Q96R69 305 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 SMDT1Q9H4I9 107 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 FKBP11Q9NYL4 201 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 R4GN57 208 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 TRIOBPQ9H2D6 2365 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 IGHV3-9P01782 118 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 CST2P09228 141 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 GABRG2P18507 467 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 ARL16Q0P5N6 197 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 SLC25A47Q6Q0C1 308 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 TCF23Q7RTU1 214 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 ZDHHC23Q8IYP9 409 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 OSR2Q8N2R0 312 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 KLHDC7BQ96G42 594 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 GABRG3Q99928 467 aa12.36□□□□□ -0.43
SDC1-201ENST00000254351 C8orf33Q9H7E9 229 aaPredicted RBP12.36□□□□□ -0.43
SDC1-201ENST00000254351 IGHV3-64DA0A0J9YX35 117 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 MAP1LC3B2A6NCE7 125 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 YPEL5P62699 121 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TOMM20LQ6UXN7 152 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 POC1BQ8TC44 478 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TMEM18Q96B42 140 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TBX15Q96SF7 602 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 DIRC2Q96SL1 478 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TMEM204Q9BSN7 226 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 MAP1LC3BQ9GZQ8 125 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 CDH20Q9HBT6 801 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TMEM131Q92545 1883 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 UBE2L5PA0A1B0GUS4 154 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TGOLN2O43493 480 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 SFTPCP11686 197 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 UCP3P55916 312 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 BSXQ3C1V8 233 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 PLCXD3Q63HM9 321 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 GJC3Q8NFK1 279 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 ST8SIA1Q92185 356 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 ZNF732B4DXR9 585 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 CRYAAP02489 173 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 IRF2P14316 349 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 MSR1P21757 451 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TDGF1P3P51864 188 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 TRA2AQ13595 282 aaKnown RBP eCLIP12.35□□□□□ -0.43
SDC1-201ENST00000254351 TMEM241Q24JQ0 296 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 LBHQ53QV2 105 aaPredicted RBP12.35□□□□□ -0.43
SDC1-201ENST00000254351 PP6455Q8WZ26 134 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 SGCZQ96LD1 299 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 SRD5A3Q9H8P0 318 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 POLR3KQ9Y2Y1 108 aaPredicted RBP12.35□□□□□ -0.43
SDC1-201ENST00000254351 PIAS3Q9Y6X2 628 aa12.35□□□□□ -0.43
SDC1-201ENST00000254351 ASPMQ8IZT6 3477 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 WDFY4Q6ZS81 3184 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 SELEP16581 610 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 PAX9P55771 341 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 IGFBP7Q16270 282 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 FAM78BQ5VT40 261 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 SIGLEC12Q96PQ1 595 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 ACTR3CQ9C0K3 210 aaPredicted RBP12.34□□□□□ -0.43
SDC1-201ENST00000254351 SLC39A9Q9NUM3 307 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 CD207Q9UJ71 328 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 TRBV24-1A0A075B6N3 115 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 BLACEA4D250 179 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 CDS2O95674 445 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 TK1P04183 234 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 CCL1P22362 96 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 GALNSP34059 522 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 UBE2G2P60604 165 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 OR5I1Q13606 314 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 C9orf135Q5VTT2 229 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 Q6ZS52 159 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 SNIP1Q8TAD8 396 aaKnown RBP12.34□□□□□ -0.43
SDC1-201ENST00000254351 PLPPR1Q8TBJ4 325 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 DTD1Q8TEA8 209 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 TWSG1Q9GZX9 223 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 DECR2Q9NUI1 292 aa12.34□□□□□ -0.43
SDC1-201ENST00000254351 MARCH11A6NNE9 402 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 B4DEV8 164 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 NRASP01111 189 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 B4GALT1P15291 398 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 TCN2P20062 427 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 TNFRSF4P43489 277 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 RND2P52198 227 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 ZXDAP98168 799 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 IQCJQ1A5X6 159 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 Q6ZRM9 215 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 LRTM2Q8N967 370 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 OR6X1Q8NH79 312 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 MS4A10Q96PG2 267 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 PATZ1Q9HBE1 687 aaKnown RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 TAAR3PQ9P1P4 343 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 MYOTQ9UBF9 498 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 RBM7Q9Y580 266 aaKnown RBP12.33□□□□□ -0.44
SDC1-201ENST00000254351 ZNF320A2RRD8 509 aa12.33□□□□□ -0.44
SDC1-201ENST00000254351 C1QTNF9BB2RNN3 333 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms