RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 OR4A8P0C604 315 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 EGR1P18146 543 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 RCC1P18754 421 aaPredicted RBP12.52□□□□□ -0.41
CCDC47-201ENST00000225726 TNFAIP6P98066 277 aaPredicted RBP12.52□□□□□ -0.41
CCDC47-201ENST00000225726 SPRNQ5BIV9 151 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 PCSK4Q6UW60 755 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 LRRC46Q96FV0 321 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 CHD3Q12873 2000 aaKnown RBP12.52□□□□□ -0.41
CCDC47-201ENST00000225726 RFPL4AA6NLU0 287 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 VSTM5A8MXK1 200 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 RFPL4AL1F8VTS6 287 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 CCSO14618 274 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 PSPNO60542 156 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 TUSC2O75896 110 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 HOXA4Q00056 320 aaPredicted RBP12.52□□□□□ -0.41
CCDC47-201ENST00000225726 ANKRD55Q3KP44 614 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 C5orf24Q7Z6I8 188 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 DIRC2Q96SL1 478 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 TRAPPC2LQ9UL33 140 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 MAP1BP46821 2468 aaKnown RBP12.51□□□□□ -0.41
CCDC47-201ENST00000225726 TMEM30CPA0ZSE6 113 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 SNAPC5O75971 98 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 CD8AP01732 235 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 PIGPP57054 158 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 SLC35E4Q6ICL7 350 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 ADAM5Q6NVV9 412 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 LINC00518Q8N0U6 118 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 PDCD10Q9BUL8 212 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 RAB18Q9NP72 206 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 MBNL3Q9NUK0 354 aaKnown RBP12.51□□□□□ -0.41
CCDC47-201ENST00000225726 NDRG3Q9UGV2 375 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 NCOR2Q9Y618 2525 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 TEX13DA0A0J9YY54 714 aaPredicted RBP12.51□□□□□ -0.41
CCDC47-201ENST00000225726 NKX2-6A6NCS4 301 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 LINC00587B1AMM8 73 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 COL10A1Q03692 680 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 GCSAMQ8N6F7 178 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 ERGIC1Q969X5 290 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 GON7Q9BXV9 100 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 CACNA1AO00555 2505 aa12.51□□□□□ -0.41
CCDC47-201ENST00000225726 ZNF98A6NK75 572 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 NPIPB11E5RHQ5 1161 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.5□□□□□ -0.41
CCDC47-201ENST00000225726 LHBP01229 141 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 ADH4P08319 380 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 TRBV6-7A0A0A0MS04 114 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 SHISA9B4DS77 424 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 M6PRP20645 277 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 RBMXP38159 391 aaKnown RBP12.5□□□□□ -0.41
CCDC47-201ENST00000225726 OR3A1P47881 315 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 SORDQ00796 357 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 HMGN3Q15651 99 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 CCDC71LQ8N9Z2 235 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 PLPPR2Q96GM1 343 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 NAA60Q9H7X0 242 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 PRDX2P32119 198 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 FGL1Q08830 312 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 LGALSLQ3ZCW2 172 aaPredicted RBP12.5□□□□□ -0.41
CCDC47-201ENST00000225726 GSG1LQ6UXU4 331 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 CD177Q8N6Q3 437 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 OR10J5Q8NHC4 309 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 Q8TCH9 128 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 CA5BP1Q8WTZ4 195 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 SLC2A9Q9NRM0 540 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 DNAJB11Q9UBS4 358 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 CADP27708 2225 aa12.5□□□□□ -0.41
CCDC47-201ENST00000225726 CD55P08174 381 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 PSG2P11465 335 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 DMRTC2Q8IXT2 367 aaPredicted RBP12.49□□□□□ -0.41
CCDC47-201ENST00000225726 FAM185AQ8N0U4 392 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 RTN4IP1Q8WWV3 396 aaPredicted RBP12.49□□□□□ -0.41
CCDC47-201ENST00000225726 RNF7Q9UBF6 113 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 NUP50Q9UKX7 468 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 KCNIP3Q9Y2W7 256 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 FAM25EA8MYX2 175 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 SERPINF1P36955 418 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 H1FOOQ8IZA3 346 aaPredicted RBP12.49□□□□□ -0.41
CCDC47-201ENST00000225726 BOLLQ8N9W6 283 aaKnown RBP12.49□□□□□ -0.41
CCDC47-201ENST00000225726 GALNT14Q96FL9 552 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 KIRREL1Q96J84 757 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 GCM1Q9NP62 436 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 PRR13Q9NZ81 148 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 METRNQ9UJH8 293 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 HMSDA8MTL9 139 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 PAX5Q02548 391 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 PHLDA2Q53GA4 152 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 ZNF565Q8N9K5 539 aa12.49□□□□□ -0.41
CCDC47-201ENST00000225726 ERRFI1Q9UJM3 462 aaPredicted RBP12.49□□□□□ -0.41
CCDC47-201ENST00000225726 IGKV1D-17A0A075B6S4 117 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 C5orf51A6NDU8 294 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 TFF1P04155 84 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 CD3EP07766 207 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 RND3P61587 244 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 OR11L1Q8NGX0 322 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 KCNIP1Q9NZI2 227 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 COMMD9Q9P000 198 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 POLEQ07864 2286 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 TRAV14DV4A0A0A6YYC5 116 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 TRAV39A0A0B4J263 110 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 C17orf100A8MU93 164 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms