RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PGPEP1LA6NFU8 196 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 LRRC3CA6NJW4 275 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 H3BMH7 237 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 WASP42768 502 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 RPL34P49207 117 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TTC32Q5I0X7 151 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 ATG4DQ86TL0 474 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SLC25A40Q8TBP6 338 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 NANOS1Q8WY41 292 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 NEIL1Q96FI4 390 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 PCED1BQ96HM7 432 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 PMCHL2Q9BQD1 86 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF665Q9H7R5 613 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 DMRT3Q9NQL9 472 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 MUC21A0A0G2JKD1 596 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 MUC21A0A140T8X8 626 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 PITX3O75364 302 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 GNB3P16520 340 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 IL3RAP26951 378 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 CORO1AP31146 461 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 ADMP35318 185 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SSTR5P35346 364 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 FASLGP48023 281 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SSBP2P81877 361 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SRSF7Q16629 238 aaKnown RBP eCLIP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 MUC21Q5SSG8 566 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 C20orf196Q8IYI0 205 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 DIO2Q92813 273 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 IRF7Q92985 503 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TNFRSF13CQ96RJ3 184 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 OR2D2Q9H210 308 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 NUMA1Q14980 2115 aa5.03□□□□□ -1.61
SCN1A-216ENST00000637968 PIGBOS1A0A0B4J2F0 54 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 SIVA1O15304 175 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 SPINK8P0C7L1 97 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 IGLC1P0CG04 106 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PSMB5P28074 263 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 BCL6P41182 706 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 FXYD4P59646 89 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 LILRA4P59901 499 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 RELBQ01201 579 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 HIST1H1AQ02539 215 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF117Q03924 483 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 DUSP2Q05923 314 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 TAF10Q12962 218 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 MLF2Q15773 248 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PRSS8Q16651 343 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 C5orf47Q569G3 176 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 OLIG3Q7RTU3 272 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 SUMF1Q8NBK3 374 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 OR10X1Q8NGY0 326 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 MRPL30Q8TCC3 161 aaKnown RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 RAB1BQ9H0U4 201 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ELOVL3Q9HB03 270 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ENY2Q9NPA8 101 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 FGF21Q9NSA1 209 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 FAM206AQ9NX38 181 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 HS3ST3A1Q9Y663 406 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PAPPAQ13219 1627 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 TRAV8-7A0A075B6U6 113 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PPIAL4DF5H284 164 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 SDCBPO00560 298 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 NEURL1O76050 574 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 CST7O76096 145 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 AADACP22760 399 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 OR1D4P47884 311 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PPOXP50336 477 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ADIPOQQ15848 244 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ITPRIPL2Q3MIP1 535 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 DOLPP1Q86YN1 238 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 DEFB125Q8N687 156 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 TEX29Q8N6K0 151 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 MRPL24Q96A35 216 aaKnown RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 RAB37Q96AX2 223 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ADAT3Q96EY9 351 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF331Q9NQX6 463 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 RGPD3A6NKT7 1758 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 RGPD4Q7Z3J3 1758 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 NHSQ6T4R5 1651 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 IGLON5A6NGN9 336 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 SSSCA1O60232 199 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 TBL1XO60907 577 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 B4GALT2O60909 372 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 MT-ND6P03923 174 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 HMGN2P05204 90 aaKnown RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF728P0DKX0 622 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 IER3P46695 156 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 HBG1P69891 147 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 HBG2P69892 147 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 MEF2BQ02080 365 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-216ENST00000637968 NUP43Q8NFH3 380 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 OR10G8Q8NGN5 311 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 SARAFQ96BY9 339 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 PERPQ96FX8 193 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 KCNS1Q96KK3 526 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 ULBP2Q9BZM5 246 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 IL21Q9HBE4 155 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 OSER1Q9NX31 292 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 TAS2R4Q9NYW5 299 aa5.02□□□□□ -1.61
SCN1A-216ENST00000637968 C5AR2Q9P296 337 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms