RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 AP4M1O00189 453 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 IL1AP01583 271 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 MT-ND2P03891 347 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 ISG15P05161 165 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 ALPLP05186 524 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 NANOS3P60323 173 aaKnown RBP15.23■□□□□ 0.03
CLN3-262ENST00000637699 PNLIPRP3Q17RR3 467 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 PAN3Q58A45 887 aaKnown RBP15.23■□□□□ 0.03
CLN3-262ENST00000637699 MOB3BQ86TA1 216 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 OR13C3Q8NGS6 347 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 OR10X1Q8NGY0 326 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 OR8U1Q8NH10 309 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 EME1Q96AY2 570 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 TENM2Q9NT68 2774 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 IGHV3-72A0A0B4J1Y9 119 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 REG1BP48304 166 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 GPR50Q13585 617 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 KIR2DS1Q14954 304 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 CXorf66Q5JRM2 361 aaPredicted RBP15.22■□□□□ 0.03
CLN3-262ENST00000637699 OR8J1Q8NGP2 316 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 MRGPRDQ8TDS7 321 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 BARHL1Q9BZE3 327 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 SCOCQ9UIL1 159 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 MYRFQ9Y2G1 1151 aa15.22■□□□□ 0.03
CLN3-262ENST00000637699 DNAH7Q8WXX0 4024 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 TRAV39A0A0B4J263 110 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 EI24O14681 340 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 HCKP08631 526 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 GPR12P47775 334 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 ZFP1Q6P2D0 407 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 RFKQ969G6 155 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 EAF1Q96JC9 268 aaPredicted RBP15.21■□□□□ 0.03
CLN3-262ENST00000637699 ZCCHC4Q9H5U6 513 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 LINC00574Q9H8X3 128 aa15.21■□□□□ 0.03
CLN3-262ENST00000637699 TRAV24A0A0B4J272 114 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 IGHV1-3A0A0C4DH29 117 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 NPIPB11E5RHQ5 1161 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 CCRL2O00421 344 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 HSD17B6O14756 317 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 HTR1AP08908 422 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 DBTP11182 482 aaKnown RBP15.2■□□□□ 0.02
CLN3-262ENST00000637699 SSTR5P35346 364 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 CDX1P47902 265 aaPredicted RBP15.2■□□□□ 0.02
CLN3-262ENST00000637699 ZP1P60852 638 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 TMED1Q13445 227 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 EBI3Q14213 229 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 KISS1Q15726 138 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 ZIK1Q3SY52 487 aaPredicted RBP15.2■□□□□ 0.02
CLN3-262ENST00000637699 TGIF2LXQ8IUE1 241 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 CNIH3Q8TBE1 160 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 PLPPR1Q8TBJ4 325 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 GON7Q9BXV9 100 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 ABCG5Q9H222 651 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 NCOR1P1Q9H4R4 102 aa15.2■□□□□ 0.02
CLN3-262ENST00000637699 GAPDHP04406 335 aaKnown RBP15.19■□□□□ 0.02
CLN3-262ENST00000637699 MTNR1BP49286 362 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 FOXE3Q13461 319 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 ZNF260Q3ZCT1 412 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 CASC10Q5T4H9 136 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 RSBN1Q5VWQ0 802 aaPredicted RBP15.19■□□□□ 0.02
CLN3-262ENST00000637699 FDX2Q6P4F2 183 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 KCTD20Q7Z5Y7 419 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 CBR4Q8N4T8 237 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 Q8N9W7 124 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 MUC7Q8TAX7 377 aa15.19■□□□□ 0.02
CLN3-262ENST00000637699 LIN7CQ9NUP9 197 aaKnown RBP15.19■□□□□ 0.02
CLN3-262ENST00000637699 ZNF256Q9Y2P7 627 aaPredicted RBP15.19■□□□□ 0.02
CLN3-262ENST00000637699 EPPK1P58107 5090 aaKnown RBP15.18■□□□□ 0.02
CLN3-262ENST00000637699 DAPL1A0PJW8 107 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 J3QLW9 94 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 EBAG9O00559 213 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 SLC16A6O15403 523 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 MPZL2O60487 215 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 LY86O95711 162 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 ELANEP08246 267 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 ZNF19P17023 458 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 CHATP28329 748 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 ALDH3A2P51648 485 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 CCR9P51686 369 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 ZNF816Q0VGE8 651 aaPredicted RBP15.18■□□□□ 0.02
CLN3-262ENST00000637699 ZSCAN26Q16670 478 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 LPCAT4Q643R3 524 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 SLC16A12Q6ZSM3 486 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 OR10A7Q8NGE5 316 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 OR2T10Q8NGZ9 312 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 TRUB1Q8WWH5 349 aaKnown RBP15.18■□□□□ 0.02
CLN3-262ENST00000637699 ORC6Q9Y5N6 252 aa15.18■□□□□ 0.02
CLN3-262ENST00000637699 OR4C45A6NMZ5 311 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 ZNF691Q5VV52 312 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 Q8N6K4 173 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 RNF152Q8N8N0 203 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 SLC29A1Q99808 456 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 S100A14Q9HCY8 104 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 IMPAD1Q9NX62 359 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 AASSQ9UDR5 926 aa15.17■□□□□ 0.02
CLN3-262ENST00000637699 SIRT4Q9Y6E7 314 aaPredicted RBP15.17■□□□□ 0.02
CLN3-262ENST00000637699 SULT1B1O43704 296 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 RRP9O43818 475 aaKnown RBP15.16■□□□□ 0.02
CLN3-262ENST00000637699 SNRPGP62308 76 aaKnown RBP15.16■□□□□ 0.02
CLN3-262ENST00000637699 ALKBH1Q13686 389 aaKnown RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms