RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 EDDM3AQ14507 147 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 TEX36Q5VZQ5 186 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 DTX2Q86UW9 622 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 FAM216BQ8N7L0 139 aa16.78■□□□□ 0.28
CLN3-250ENST00000636839 A0A0A6YYJ9 748 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 VSIG10L2P0DP72 767 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 ACTBL2Q562R1 376 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 AADACL3Q5VUY0 350 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 SHEQ5VZ18 495 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 ZNF880Q6PDB4 577 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 GAPTQ8N292 157 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 PRR18Q8N4B5 295 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 HPS1Q92902 700 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 GAFA1Q96PS6 74 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 PRRT1Q99946 306 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 SLC2A8Q9NY64 477 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 TRAPPC2LQ9UL33 140 aa16.77■□□□□ 0.28
CLN3-250ENST00000636839 OR5H14A6NHG9 310 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 NDUFS7O75251 213 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 SEC61A1P61619 476 aaKnown RBP16.77■□□□□ 0.27
CLN3-250ENST00000636839 BAMBIQ13145 260 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 ZNF660Q6AZW8 331 aaPredicted RBP16.77■□□□□ 0.27
CLN3-250ENST00000636839 TERB2Q8NHR7 220 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 MARCH1Q8TCQ1 289 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 CAPSLQ8WWF8 208 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 GIMAP1Q8WWP7 306 aa16.77■□□□□ 0.27
CLN3-250ENST00000636839 ZNF2Q9BSG1 426 aaPredicted RBP16.77■□□□□ 0.27
CLN3-250ENST00000636839 RIMS4Q9H426 269 aaPredicted RBP16.77■□□□□ 0.27
CLN3-250ENST00000636839 PPIAL4EA0A075B759 164 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 TRBV6-6A0A0A6YYG2 114 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 TRDCB7Z8K6 153 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 PPIAL4DF5H284 164 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 FABP7O15540 132 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 PPIAL4FP0DN26 164 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 NFYAP23511 347 aaPredicted RBP16.76■□□□□ 0.27
CLN3-250ENST00000636839 MDH2P40926 338 aaKnown RBP16.76■□□□□ 0.27
CLN3-250ENST00000636839 BTG1P62324 171 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 KRBOX4Q5JUW0 171 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 ATPAF1Q5TC12 328 aaPredicted RBP16.76■□□□□ 0.27
CLN3-250ENST00000636839 TMED4Q7Z7H5 227 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 SEC22CQ9BRL7 303 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 NECAP2Q9NVZ3 263 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 PPIAL4AQ9Y536 164 aa16.76■□□□□ 0.27
CLN3-250ENST00000636839 MEIKINA0A087WXM9 373 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 K7N7A8 449 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 LGALS8O00214 317 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 BET1O15155 118 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 PEX14O75381 377 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 FCN3O75636 299 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 MUC1P15941 1255 aaPredicted RBP16.75■□□□□ 0.27
CLN3-250ENST00000636839 PI3P19957 117 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 ZMYND11Q15326 602 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 FAM53AQ6NSI3 398 aaPredicted RBP16.75■□□□□ 0.27
CLN3-250ENST00000636839 LYPD2Q6UXB3 125 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 LHFPL1Q86WI0 220 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 ARRDC1Q8N5I2 433 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 TK1P04183 234 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 HFEQ30201 348 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 ZNF788Q6ZQV5 615 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 Q6ZS49 121 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 OR52B4Q8NGK2 314 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 SDSLQ96GA7 329 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 KIRREL1Q96J84 757 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 SNX22Q96L94 193 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 SPOCK3Q9BQ16 436 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 ZNF221Q9UK13 617 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 TACC2O95359 2948 aa16.75■□□□□ 0.27
CLN3-250ENST00000636839 TENM4Q6N022 2769 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 TMEM30CPA0ZSE6 113 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 TMPRSS2O15393 492 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 PFDN1O60925 122 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 PLA2G2AP14555 144 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 FCGR2CP31995 323 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 CBX3Q13185 183 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 SLC35E4Q6ICL7 350 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 C1orf87Q8N0U7 546 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 ADAD2Q8NCV1 583 aaKnown RBP16.74■□□□□ 0.27
CLN3-250ENST00000636839 TMEM185AQ8NFB2 350 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 OR13A1Q8NGR1 328 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 OR6F1Q8NGZ6 308 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 MRGPRDQ8TDS7 321 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 SLC25A21Q9BQT8 299 aaPredicted RBP16.74■□□□□ 0.27
CLN3-250ENST00000636839 RAB1BQ9H0U4 201 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 DHFRP00374 187 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 COL8A1P27658 744 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 SRSF7Q16629 238 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLN3-250ENST00000636839 SLC36A1Q7Z2H8 476 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 IL1F10Q8WWZ1 152 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 CLEC4MQ9H2X3 399 aaPredicted RBP16.74■□□□□ 0.27
CLN3-250ENST00000636839 GHITMQ9H3K2 345 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 TAF9BQ9HBM6 251 aa16.74■□□□□ 0.27
CLN3-250ENST00000636839 MBNL3Q9NUK0 354 aaKnown RBP16.74■□□□□ 0.27
CLN3-250ENST00000636839 TANC2Q9HCD6 1990 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 TRAV38-1A0A0B4J264 116 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 RP2O75695 350 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 SP5Q6BEB4 398 aaPredicted RBP16.73■□□□□ 0.27
CLN3-250ENST00000636839 DHRS11Q6UWP2 260 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 ZNF561Q8N587 486 aa16.73■□□□□ 0.27
CLN3-250ENST00000636839 DACT3Q96B18 629 aaPredicted RBP16.73■□□□□ 0.27
CLN3-250ENST00000636839 NEURL2Q9BR09 285 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms