RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 IL1AP01583 271 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 IGKV1D-33P01593 117 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 IGKV1-33P01594 117 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 SSTR5P35346 364 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 REG1BP48304 166 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 SOX2P48431 317 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 RASSF2P50749 326 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 RSBN1Q5VWQ0 802 aaPredicted RBP12.76□□□□□ -0.37
CLN3-246ENST00000636228 FAM53AQ6NSI3 398 aaPredicted RBP12.76□□□□□ -0.37
CLN3-246ENST00000636228 PARP16Q8N5Y8 322 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 UBALD1Q8TB05 177 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 TNFAIP8L1Q8WVP5 186 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 GPER1Q99527 375 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 FAM192AQ9GZU8 254 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 ORC6Q9Y5N6 252 aa12.76□□□□□ -0.37
CLN3-246ENST00000636228 IGHV3-72A0A0B4J1Y9 119 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 NPIPB11E5RHQ5 1161 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 CIB2O75838 187 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 ATP5HO75947 161 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 GABRB1P18505 474 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 GTF2A1P52655 376 aaPredicted RBP12.75□□□□□ -0.37
CLN3-246ENST00000636228 CD69Q07108 199 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 MADCAM1Q13477 382 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 ELP2Q6IA86 826 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 OR51D1Q8NGF3 324 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 OR5AK2Q8NH90 309 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 CHPT1Q8WUD6 406 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 PCDHB16Q9NRJ7 776 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 ERVK13-1Q9NX77 482 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 TAS2R4Q9NYW5 299 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 GMPPBQ9Y5P6 360 aa12.75□□□□□ -0.37
CLN3-246ENST00000636228 TMEM212A6NML5 194 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 CDRT1O95170 752 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 HTR3BO95264 441 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 RAB3AP20336 220 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 RAB7AP51149 207 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 RSU1Q15404 277 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 LCNL1Q6ZST4 164 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 SLC35E3Q7Z769 313 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 MOB3BQ86TA1 216 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 SYS1Q8N2H4 156 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 CBR4Q8N4T8 237 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 KLHL30-AS1Q8NEE0 82 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 PXT1Q8NFP0 134 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 OR10X1Q8NGY0 326 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 HAVCR2Q8TDQ0 301 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 RGP1Q92546 391 aaPredicted RBP12.74□□□□□ -0.37
CLN3-246ENST00000636228 DPF1Q92782 380 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 MRPL48Q96GC5 212 aaKnown RBP12.74□□□□□ -0.37
CLN3-246ENST00000636228 LINC00574Q9H8X3 128 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLN3-246ENST00000636228 ING4Q9UNL4 249 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 KIAA2026Q5HYC2 2103 aa12.74□□□□□ -0.37
CLN3-246ENST00000636228 SNTNA6NMZ2 147 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 H3BNX3 289 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 HSD17B6O14756 317 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 MAGEB3O15480 346 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 RPSAP08865 295 aaKnown RBP12.73□□□□□ -0.37
CLN3-246ENST00000636228 MYCNOSP40205 109 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 ALDH3A2P51648 485 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 GBX2P52951 348 aaPredicted RBP12.73□□□□□ -0.37
CLN3-246ENST00000636228 RAB25P57735 213 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 IL13RA2Q14627 380 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 SUMF2Q8NBJ7 301 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 OR52I1Q8NGK6 324 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 CCDC107Q8WV48 283 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 TFAP2CQ92754 450 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 DPCDQ9BVM2 203 aaPredicted RBP12.73□□□□□ -0.37
CLN3-246ENST00000636228 NCOR1P1Q9H4R4 102 aa12.73□□□□□ -0.37
CLN3-246ENST00000636228 NCBP2LA6PVI3 153 aaKnown RBP12.72□□□□□ -0.37
CLN3-246ENST00000636228 CCRL2O00421 344 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 FGF16O43320 207 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 FADS2O95864 444 aaKnown RBP12.72□□□□□ -0.37
CLN3-246ENST00000636228 IGHG2P01859 326 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 ZNF529Q6P280 563 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 OR8H3Q8N146 312 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 STPG2Q8N412 459 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 RHOXF1Q8NHV9 184 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 ORAI1Q96D31 301 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 RAX2Q96IS3 184 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 EAF1Q96JC9 268 aaPredicted RBP12.72□□□□□ -0.37
CLN3-246ENST00000636228 P2RX4Q99571 388 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 B9D2Q9BPU9 175 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 JAM3Q9BX67 310 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 ZFP57Q9NU63 452 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 ST3GAL6Q9Y274 331 aa12.72□□□□□ -0.37
CLN3-246ENST00000636228 COL7A1Q02388 2944 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 IGHV3-43A0A0B4J1X8 118 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 IGHV1-3A0A0C4DH29 117 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 OR7C1O76099 320 aaPredicted RBP12.71□□□□□ -0.37
CLN3-246ENST00000636228 GAPDHP04406 335 aaKnown RBP12.71□□□□□ -0.37
CLN3-246ENST00000636228 RPLP1P05386 114 aaKnown RBP12.71□□□□□ -0.37
CLN3-246ENST00000636228 IGHV3-43DP0DP04 118 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 SLC35B1P78383 322 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 DEFB136Q30KP8 78 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 XAF1Q6GPH4 301 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 ASCL4Q6XD76 172 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 ZNF695Q8IW36 515 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 Q8NFD4 153 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 GPR61Q9BZJ8 451 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms