RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 BHLHA15Q7RTS1 189 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-210ENST00000635776 TMEM230Q96A57 120 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 COA4Q9NYJ1 87 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 RCL1Q9Y2P8 373 aaKnown RBP3.92□□□□□ -1.78
SCN1A-210ENST00000635776 DOCK9Q9BZ29 2069 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 COL4A2P08572 1712 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 SLC33A1O00400 549 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-210ENST00000635776 HS3ST1O14792 307 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 MGST3O14880 152 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 OMGP23515 440 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 S100PP25815 95 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 SERF2P84101 59 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 SLC35E4Q6ICL7 350 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 TMEM108Q6UXF1 575 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 TBC1D26Q86UD7 250 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 DTX1Q86Y01 620 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 HSD17B11Q8NBQ5 300 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 GNG12Q9UBI6 72 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 ERRFI1Q9UJM3 462 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-210ENST00000635776 WSB1Q9Y6I7 421 aa3.92□□□□□ -1.78
SCN1A-210ENST00000635776 TRAV14DV4A0A0A6YYC5 116 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 SIRPB1O00241 398 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 IFNA17P01571 189 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 RFC3P40938 356 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 PIGYQ3MUY2 71 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 S100A7AQ86SG5 101 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 MRPL24Q96A35 216 aaKnown RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 TXNDC17Q9BRA2 123 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 CABLES2Q9BTV7 478 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 PURGQ9UJV8 347 aaKnown RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 FOXI3A8MTJ6 420 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 M0R036 132 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 SYNGR2O43760 224 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 ANKRD55Q3KP44 614 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 TIMM23BQ5SRD1 257 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 LYRM2Q9NU23 88 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 ELOVL5Q9NYP7 299 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 CYB5BO43169 146 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 HAND1O96004 215 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 EDN3P14138 238 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 PNRC1Q12796 327 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 H2BFWTQ7Z2G1 175 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 RELL2Q8NC24 303 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 CLRN3Q8NCR9 226 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 OR10P1Q8NGE3 313 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 UQCC1Q9NVA1 299 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 KLF2Q9Y5W3 355 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 MED12Q93074 2177 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 hCG_1809904A0A1W2PP81 198 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 A0A1W2PPE2 198 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 A0A1W2PR64 198 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 A0A1W2PRV1 198 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 RNASEK-C17orf49H0YIS7 233 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 SCGB2A1O75556 95 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 NAPSAO96009 420 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 COX5AP20674 150 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 KLF3P57682 345 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 C1orf185Q5T7R7 199 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 GCSAMQ8N6F7 178 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 MSI2Q96DH6 328 aaKnown RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 NCOR1P1Q9H4R4 102 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 CDX4O14627 284 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 HKR1P10072 659 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 CTAG1AP78358 180 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 CLINT1Q14677 625 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 C1QL2Q7Z5L3 287 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 S1PR3Q99500 378 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 NIPSNAP3BQ9BS92 247 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 KIAA1456Q9P272 454 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 NACAE9PAV3 2078 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 OR5H1A6NKK0 313 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 B4DEV8 164 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 ACSF3Q4G176 576 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 GAPTQ8N292 157 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 PRR7Q8TB68 274 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 SLC25A40Q8TBP6 338 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 LURAP1Q96LR2 239 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 ATP5SQ99766 215 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 DLL3Q9NYJ7 618 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 SCN2AQ99250 2005 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 GRPP07492 148 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 NFYBP25208 207 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 BTN1A1Q13410 526 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 SNX22Q96L94 193 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 ZNF251Q9BRH9 671 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 C19orf12Q9NSK7 152 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 PSENENQ9NZ42 101 aa3.91□□□□□ -1.78
SCN1A-210ENST00000635776 RP1L1Q8IWN7 2480 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-210ENST00000635776 HSD17B6O14756 317 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 TUSC2O75896 110 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 KITLGP21583 273 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 EWSR1Q01844 656 aaKnown RBP eCLIP3.9□□□□□ -1.78
SCN1A-210ENST00000635776 AVPI1Q5T686 147 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 RPL7L1Q6DKI1 246 aaKnown RBP3.9□□□□□ -1.78
SCN1A-210ENST00000635776 OR4A16Q8NH70 328 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 FAM213BQ8TBF2 198 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 SMIM8Q96KF7 97 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 JPT1Q9UK76 154 aa3.9□□□□□ -1.78
SCN1A-210ENST00000635776 CARHSP1Q9Y2V2 147 aaKnown RBP3.9□□□□□ -1.78
SCN1A-210ENST00000635776 A0A0A6YYD4 124 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms