RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZNF573Q86YE8 665 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 Q8NFD4 153 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 OPN3Q9H1Y3 402 aaPredicted RBP9.04□□□□□ -0.96
CUX1-221ENST00000622516 OR51I2Q9H344 312 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 CCL28Q9NRJ3 127 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 SESN1Q9Y6P5 492 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 SPTA1P02549 2419 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 IGHG3P01860 377 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 GLAP06280 429 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 TPT1P13693 172 aaKnown RBP9.04□□□□□ -0.96
CUX1-221ENST00000622516 RAC2P15153 192 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 ECI1P42126 302 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 FABP6P51161 128 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 RPRMLQ8N4K4 120 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 SLC35G3Q8N808 338 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 SCCPDHQ8NBX0 429 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 MSI2Q96DH6 328 aaKnown RBP9.04□□□□□ -0.96
CUX1-221ENST00000622516 KIRREL1Q96J84 757 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 BCL2L14Q9BZR8 327 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 SLC5A7Q9GZV3 580 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 OR14J1Q9UGF5 321 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 MEMO1Q9Y316 297 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 MPC1Q9Y5U8 109 aa9.04□□□□□ -0.96
CUX1-221ENST00000622516 K7EPK0 472 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 DEGS1O15121 323 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 RPL12P30050 165 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 UCP2P55851 309 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 LIAT1Q6ZQX7 453 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 TBC1D26Q86UD7 250 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 LDLRAD3Q86YD5 345 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 FAM71E2Q8N5Q1 922 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 ZNF610Q8N9Z0 462 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 C3orf85A0A1B0GTC6 90 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 MPPED1O15442 326 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 GATCO43716 136 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 SLC34A2O95436 690 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 SRSF3P84103 164 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 ZNF154Q13106 437 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 ATRAIDQ6UW56 229 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 Q6ZT83 130 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 MRPL30Q8TCC3 161 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 KLF14Q8TD94 323 aaPredicted RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 ERGIC1Q969X5 290 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 SHARPINQ9H0F6 387 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 ESRP2Q9H6T0 727 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 MSL2Q9HCI7 577 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 OBP2BQ9NPH6 170 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 UFSP2Q9NUQ7 469 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 DLL3Q9NYJ7 618 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 RCC2Q9P258 522 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 KLF2Q9Y5W3 355 aaPredicted RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 USF3Q68DE3 2245 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 TLN1Q9Y490 2541 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 DEDDO75618 318 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 ZP3P21754 424 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 ID4P47928 161 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 TMEM33P57088 247 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 PRSS33Q8NF86 280 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 AQP10Q96PS8 301 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 PRRX2Q99811 253 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 SYT3Q9BQG1 590 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 ADAT1Q9BUB4 502 aaKnown RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 RSRP1Q9BUV0 290 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 TMEM231Q9H6L2 316 aa9.03□□□□□ -0.96
CUX1-221ENST00000622516 UBE2J1Q9Y385 318 aaPredicted RBP9.03□□□□□ -0.96
CUX1-221ENST00000622516 COL12A1Q99715 3063 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 MED19A0JLT2 244 aaPredicted RBP9.02□□□□□ -0.97
CUX1-221ENST00000622516 NKX2-6A6NCS4 301 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 OR5B21A6NL26 309 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 LINC00587B1AMM8 73 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 TRDCB7Z8K6 153 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 WNT9BO14905 357 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 SNAPINO95295 136 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 PET100P0DJ07 73 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 PCP4P48539 62 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 MPV17LQ2QL34 196 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 FAM53AQ6NSI3 398 aaPredicted RBP9.02□□□□□ -0.97
CUX1-221ENST00000622516 DPPA2Q7Z7J5 298 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 SAXO1Q8IYX7 474 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 BPIFCQ8NFQ6 507 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 GALNT14Q96FL9 552 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 MAGT1Q9H0U3 335 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 OR1A1Q9P1Q5 309 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 DKK4Q9UBT3 224 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 FBXL17Q9UF56 701 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 ZNF705EA8MWA4 302 aaPredicted RBP9.02□□□□□ -0.97
CUX1-221ENST00000622516 AGPAT2O15120 278 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 WDR1O75083 606 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 LYL1P12980 280 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 HOXC12P31275 282 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 IL24Q13007 206 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 MRPL49Q13405 166 aaKnown RBP9.02□□□□□ -0.97
CUX1-221ENST00000622516 SMCO1Q147U7 214 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 TMEM95Q3KNT9 176 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 IGFL2Q6UWQ7 119 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 FBXW12Q6X9E4 464 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 PLPPR1Q8TBJ4 325 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 C18orf12Q96KH6 178 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 HRH4Q9H3N8 390 aa9.02□□□□□ -0.97
CUX1-221ENST00000622516 MED9Q9NWA0 146 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms