RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 F12P00748 615 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-212ENST00000616140 RAB7AP51149 207 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 PNRC1Q12796 327 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-212ENST00000616140 ATP6V1FQ16864 119 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 SPOCK3Q9BQ16 436 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 PRO1933Q9H354 126 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 GYPAP02724 150 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 RCC1P18754 421 aaPredicted RBP12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FAM162BQ5T6X4 162 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 LPAR5Q9H1C0 372 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 OR6C3Q9NZP0 311 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 RCC2Q9P258 522 aaKnown RBP12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FCN1O00602 326 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FGF2P09038 288 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FSTP19883 344 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 HIKESHIQ53FT3 197 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 TMEM65Q6PI78 240 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 TRAT1Q6PIZ9 186 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 KLHDC1Q8N7A1 406 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 OR11H4Q8NGC9 324 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 ZNRF4Q8WWF5 429 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 DNPH1O43598 174 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 CRYBA1P05813 215 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 SULT1A1P50225 295 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 ERVS71-1P61550 626 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FOXO1Q12778 655 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 IQCJQ1A5X6 159 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FAM27BQ5VT28 67 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 FAM78BQ5VT40 261 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 LHFPL5Q8TAF8 219 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 DTD1Q8TEA8 209 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 MS4A10Q96PG2 267 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 DOK5Q9P104 306 aa12.25□□□□□ -0.45
CPSF1-212ENST00000616140 PMELP40967 661 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 MRPS11P82912 194 aaKnown RBP12.24□□□□□ -0.45
CPSF1-212ENST00000616140 ZP4Q12836 540 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 PMS2P11Q13670 270 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-212ENST00000616140 TMEM108Q6UXF1 575 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 SLC24A4Q8NFF2 622 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 OR5A2Q8NGI9 324 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 CTHRC1Q96CG8 243 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 CXXC4Q9H2H0 198 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 OR2W1Q9Y3N9 320 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 IGLV1-36A0A0B4J1U3 117 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 hADV38S2A0JD32 116 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 RBP4P02753 201 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 SEC11BP0C7V7 166 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 ATP6V0CP27449 155 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 GNG4P50150 75 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 KHDC1LQ5JSQ8 128 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 DHRS7BQ6IAN0 325 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-212ENST00000616140 FAM122AQ96E09 287 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 MISP3Q96FF7 219 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 VAMP8Q9BV40 100 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 SHISA3A0PJX4 238 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 LMX1BO60663 402 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 CELA2AP08217 269 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 VAMP3Q15836 100 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 ZNF660Q6AZW8 331 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-212ENST00000616140 MYPOPQ86VE0 399 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-212ENST00000616140 OR2T10Q8NGZ9 312 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 OR4S2Q8NH73 311 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 R3HDM4Q96D70 268 aa12.24□□□□□ -0.45
CPSF1-212ENST00000616140 DUSP15Q9H1R2 295 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-212ENST00000616140 VAX1Q5SQQ9 334 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 RGP1Q92546 391 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 BCL2L2Q92843 193 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 RPEQ96AT9 228 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 GPR87Q9BY21 358 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 WDR54Q9H977 334 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 ARHGEF17Q96PE2 2063 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 DUXBA0A1W2PPF3 345 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 SMIM10L1P0DMW3 83 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 TRIP6Q15654 476 aaKnown RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 SMIM10Q96HG1 83 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 MYOZ1Q9NP98 299 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 ZNF831Q5JPB2 1677 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 QSER1Q2KHR3 1735 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 SIGLEC5O15389 551 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 HAND1O96004 215 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 NHLH2Q02577 135 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 SIGLEC14Q08ET2 396 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 ZNF260Q3ZCT1 412 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 FAM209AQ5JX71 171 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 FNDC7Q5VTL7 733 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 SSMEM1Q8WWF3 244 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 ZNF488Q96MN9 340 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 NOL4LQ96MY1 436 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 PRSS50Q9UI38 385 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 KIF26BQ2KJY2 2108 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 NCBP2LA6PVI3 153 aaKnown RBP12.23□□□□□ -0.45
CPSF1-212ENST00000616140 MFNGO00587 321 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 ZNF880Q6PDB4 577 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 OR5D13Q8NGL4 314 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 MSL2Q9HCI7 577 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 PARP11Q9NR21 331 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 OR5AC2Q9NZP5 309 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 CLEC1BQ9P126 229 aa12.23□□□□□ -0.45
CPSF1-212ENST00000616140 SCN10AQ9Y5Y9 1956 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms