RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PTHLHP12272 177 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 CPEP16870 476 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 LSM3P62310 102 aaKnown RBP4.58□□□□□ -1.68
CPNE3-208ENST00000614678 HNF4GQ14541 408 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 ELP2Q6IA86 826 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 RITA1Q96K30 269 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 FAM210AQ96ND0 272 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 RAB26Q9ULW5 256 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 PSG11Q9UQ72 335 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 PAHP00439 452 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 UCHL1P09936 223 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 FSTP19883 344 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 PSMB9P28065 219 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 TMEM50BP56557 158 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 MXD1Q05195 221 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 GPR50Q13585 617 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 TPBGQ13641 420 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 SPIN3Q5JUX0 258 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 SYT6Q5T7P8 510 aaPredicted RBP4.58□□□□□ -1.68
CPNE3-208ENST00000614678 ZNF626Q68DY1 528 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 C12orf54Q6X4T0 127 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 C3orf56Q8N813 242 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 Q8NFD4 153 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 METTL9Q9H1A3 318 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 TMEM133Q9H2Q1 129 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 KCNK7Q9Y2U2 307 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 TPRKBQ9Y3C4 175 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 LINC00312Q9Y6C7 94 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 TRBV23-1A0A0A0MS06 115 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 C15orf65H3BRN8 121 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 ALX3O95076 343 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 CSTBP04080 98 aaKnown RBP4.58□□□□□ -1.68
CPNE3-208ENST00000614678 ACSM1Q08AH1 577 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 HSD17B12Q53GQ0 312 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 PLAC9Q5JTB6 97 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 RAB12Q6IQ22 244 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 DRAXINQ8NBI3 349 aaPredicted RBP4.58□□□□□ -1.68
CPNE3-208ENST00000614678 OR52L2PQ8NGH6 319 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 NEK7Q8TDX7 302 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 UFD1Q92890 307 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 Q96M66 194 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 CENPOQ9BU64 300 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 FAM234AQ9H0X4 552 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 CALYQ9NYX4 217 aa4.58□□□□□ -1.68
CPNE3-208ENST00000614678 UBE2J1Q9Y385 318 aaPredicted RBP4.58□□□□□ -1.68
CPNE3-208ENST00000614678 A0A075B6Q4 140 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 C12orf77C9JDV5 145 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 DENRO43583 198 aaKnown RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 IGLV1-47P01700 117 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 ALDOBP05062 364 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 MTNR1BP49286 362 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 CMTM4Q8IZR5 234 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 BEND2Q8NDZ0 799 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 SSMEM1Q8WWF3 244 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 MRPL48Q96GC5 212 aaKnown RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 TCF7L1Q9HCS4 588 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 ZNF230Q9UIE0 474 aaPredicted RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 hADV38S2A0JD32 116 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 MT-ND4P03905 459 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 AMY1AP04745 511 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 AMY2AP04746 511 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 FBP1P09467 338 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 GTF2F2P13984 249 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 RAG2P55895 527 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 LOXL3P58215 753 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 MLLT11Q13015 90 aaPredicted RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 IZUMO1Q8IYV9 350 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 ZSCAN4Q8NAM6 433 aaPredicted RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 NDNFQ8TB73 568 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 NAA50Q9GZZ1 169 aaKnown RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 KBTBD11-OT1A0A1B0GTJ5 212 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 IRGMA1A4Y4 181 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 GPR37O15354 613 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 TBCEQ15813 527 aaPredicted RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 RNLSQ5VYX0 342 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 Q8IYB0 196 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 SAXO1Q8IYX7 474 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 OR11H6Q8NGC7 330 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 OR5D13Q8NGL4 314 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 OR56B4Q8NH76 319 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 ARL11Q969Q4 196 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 LPAR5Q9H1C0 372 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 VPREB3Q9UKI3 123 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 IGKV1D-8A0A087WSZ0 117 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 TRGV10A0A0A0MS01 117 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 GADD45AP24522 165 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 PPP1CCP36873 323 aaKnown RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 VEGFCP49767 419 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 MRPL28Q13084 256 aaKnown RBP4.57□□□□□ -1.68
CPNE3-208ENST00000614678 C2orf76Q3KRA6 126 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 HEPN1Q6WQI6 88 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 ZNF497Q6ZNH5 498 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 LCNL1Q6ZST4 164 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 LDLRAD3Q86YD5 345 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 WFDC12Q8WWY7 111 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 ARHGAP5-AS1Q96IT6 56 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 CHCHD6Q9BRQ6 235 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 CKLFQ9UBR5 152 aa4.57□□□□□ -1.68
CPNE3-208ENST00000614678 LOC100506127A0A0U1RQW1 187 aa4.56□□□□□ -1.68
CPNE3-208ENST00000614678 TMEM272A0A1B0GTI8 110 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms