RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SPEM2Q0P670 501 aa10.91□□□□□ -0.66
LIG1-221ENST00000613670 HLA-BQ31612 363 aa10.91□□□□□ -0.66
LIG1-221ENST00000613670 ZDHHC23Q8IYP9 409 aa10.91□□□□□ -0.66
LIG1-221ENST00000613670 CLEC18CQ8NCF0 446 aa10.91□□□□□ -0.66
LIG1-221ENST00000613670 OR13D1Q8NGV5 346 aa10.91□□□□□ -0.66
LIG1-221ENST00000613670 MOB3AQ96BX8 217 aa10.91□□□□□ -0.66
LIG1-221ENST00000613670 AURKAIP1Q9NWT8 199 aaPredicted RBP10.91□□□□□ -0.66
LIG1-221ENST00000613670 A0A1W2PPV4 95 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 ZNF17P17021 662 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 AGAP20933 346 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 ANOS1P23352 680 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 GAMTQ14353 236 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 ABHD3Q8WU67 409 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 ADGRG7Q96K78 797 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 TMEM222Q9H0R3 208 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 PATZ1Q9HBE1 687 aaKnown RBP10.9□□□□□ -0.66
LIG1-221ENST00000613670 RANBP2P49792 3224 aaKnown RBP10.9□□□□□ -0.66
LIG1-221ENST00000613670 GRPP07492 148 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 UBE2G2P60604 165 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 RAC1P63000 192 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 PSG4Q00888 419 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 CLN3Q13286 438 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 GFI1BQ5VTD9 330 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 ZNF441Q8N8Z8 693 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 Q8WTZ3 238 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 ATP5SQ99766 215 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 CTXN2P0C2S0 81 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 TRGC1P0CF51 173 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 SRFP11831 508 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 RBM11P57052 281 aaKnown RBP10.9□□□□□ -0.66
LIG1-221ENST00000613670 ARF1P84077 181 aaKnown RBP10.9□□□□□ -0.66
LIG1-221ENST00000613670 SPINK9Q5DT21 86 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 FAM27BQ5VT28 67 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 OR10D3Q8NH80 312 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 PLPPR2Q96GM1 343 aa10.9□□□□□ -0.66
LIG1-221ENST00000613670 A0A1W2PR77 199 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 SHISA7A6NL88 538 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 NXPH2O95156 264 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 HOXB1P14653 301 aaPredicted RBP10.9□□□□□ -0.67
LIG1-221ENST00000613670 RPS2P15880 293 aaKnown RBP10.9□□□□□ -0.67
LIG1-221ENST00000613670 G0S2P27469 103 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 TMEM41BQ5BJD5 291 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 SPNS3Q6ZMD2 512 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 TM2D1Q9BX74 207 aa10.9□□□□□ -0.67
LIG1-221ENST00000613670 KLF2Q9Y5W3 355 aaPredicted RBP10.9□□□□□ -0.67
LIG1-221ENST00000613670 A0A1B0GV90 55 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 XKRY2A2RUG3 117 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 PITX3O75364 302 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 MMP7P09237 267 aaPredicted RBP10.89□□□□□ -0.67
LIG1-221ENST00000613670 RAB4BP61018 213 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 EXT1Q16394 746 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 LINC00696Q6ZRV3 163 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 LRP11Q86VZ4 500 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 CLDN23Q96B33 292 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 ZNF737O75373 536 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 PDGFBP01127 241 aaPredicted RBP10.89□□□□□ -0.67
LIG1-221ENST00000613670 PSG2P11465 335 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 CHRNA7P36544 502 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 ZNF816Q0VGE8 651 aaPredicted RBP10.89□□□□□ -0.67
LIG1-221ENST00000613670 IL24Q13007 206 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 C10orf91Q5T1B1 145 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 ZNF705AQ6ZN79 300 aaPredicted RBP10.89□□□□□ -0.67
LIG1-221ENST00000613670 ZNF818PQ6ZRF7 136 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 B4GALT7Q9UBV7 327 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 PISDQ9UG56 409 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 ABHD17BQ5VST6 288 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 TMEM211Q6ICI0 200 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 ZNF600Q6ZNG1 722 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 CALHM1Q8IU99 346 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 GALNT14Q96FL9 552 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 TMEM38BQ9NVV0 291 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 ABI3Q9P2A4 366 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 DMRT1Q9Y5R6 373 aa10.89□□□□□ -0.67
LIG1-221ENST00000613670 NCOA6Q14686 2063 aaPredicted RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 GATCO43716 136 aaKnown RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 RNF224P0DH78 156 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 FOLR2P14207 255 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 CTAG1AP78358 180 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 OR2V1Q8NHB1 315 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 RHBDD1Q8TEB9 315 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 OR2H1Q9GZK4 316 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 SYNGR2O43760 224 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 SRP19P09132 144 aaKnown RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 CCL4P13236 92 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 RAC3P60763 192 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 MSMO1Q15800 293 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 CA5BP1Q8WTZ4 195 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 C10orf35Q96D05 121 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 GPR87Q9BY21 358 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 ANGPTL4Q9BY76 406 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 OR51I2Q9H344 312 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 TUBA4BQ9H853 241 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 PTBP3O95758 552 aaKnown RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 CXCL1P09341 107 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 LIFP15018 202 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 HOXA5P20719 270 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 CYB561P49447 251 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 TAS2R30P59541 319 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 TMEM241Q24JQ0 296 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 KCNIP4Q6PIL6 250 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms