RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 hADV38S2A0JD32 116 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 SULT1C2O00338 296 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 PTHLHP12272 177 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 DTYMKP23919 212 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 MADCAM1Q13477 382 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 CR1LQ2VPA4 569 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 ZNF880Q6PDB4 577 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 FAM131AQ6UXB0 335 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 SNX29P2Q8IUI4 249 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 TPRX1Q8N7U7 411 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 CORO2AQ92828 525 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 HDHD3Q9BSH5 251 aaPredicted RBP11.86□□□□□ -0.51
UPF1-211ENST00000600868 C19orf12Q9NSK7 152 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 MBNL3Q9NUK0 354 aaKnown RBP11.86□□□□□ -0.51
UPF1-211ENST00000600868 ING3Q9NXR8 418 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 OR6C3Q9NZP0 311 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 LINC00312Q9Y6C7 94 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 VPS13CQ709C8 3753 aa11.86□□□□□ -0.51
UPF1-211ENST00000600868 PPIAL4CA0A0B4J2A2 164 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 B4DSR2 109 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 C22orf46C9J442 243 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 CTDSPLO15194 276 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 SSX5O60225 188 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 LPLP06858 475 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 CBX5P45973 191 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 LCN2P80188 198 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 MRPS10P82664 201 aaKnown RBP11.85□□□□□ -0.51
UPF1-211ENST00000600868 ZNF45Q02386 682 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 PAX2Q02962 417 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 SRSF7Q16629 238 aaKnown RBP eCLIP11.85□□□□□ -0.51
UPF1-211ENST00000600868 TMEM200BQ69YZ2 307 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 MOB1BQ7L9L4 216 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 ZNF565Q8N9K5 539 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 MAPK1IP1LQ8NDC0 245 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 GPX8Q8TED1 209 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 NUDCD2Q8WVJ2 157 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 S100ZQ8WXG8 99 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 DACT3Q96B18 629 aaPredicted RBP11.85□□□□□ -0.51
UPF1-211ENST00000600868 OCSTAMPQ9BR26 566 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 CHMP1AQ9HD42 196 aaPredicted RBP11.85□□□□□ -0.51
UPF1-211ENST00000600868 AKIP1Q9NQ31 210 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 TRAPPC2LQ9UL33 140 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 MGAT4AQ9UM21 535 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 UBE2J1Q9Y385 318 aaPredicted RBP11.85□□□□□ -0.51
UPF1-211ENST00000600868 SETXQ7Z333 2677 aaKnown RBP11.85□□□□□ -0.51
UPF1-211ENST00000600868 DSCAML1Q8TD84 2053 aa11.85□□□□□ -0.51
UPF1-211ENST00000600868 CR1P17927 2039 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 MYO9AB2RTY4 2548 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 TRGV10A0A0A0MS01 117 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 IGHV2-70DA0A0C4DH43 119 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 MEIOCA2RUB1 952 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 ENSAO43768 121 aaKnown RBP11.84□□□□□ -0.51
UPF1-211ENST00000600868 LIPFP07098 398 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 FCGR3AP08637 254 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 PPIAL4GP0DN37 164 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 CGB3P0DN86 165 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 CGB7P0DN87 165 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 GZMKP49863 264 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 ZNF79Q15937 498 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 TMEM249Q2WGJ8 235 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 C6orf183Q5T699 404 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 TRAT1Q6PIZ9 186 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 SPNS3Q6ZMD2 512 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 TCF23Q7RTU1 214 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 TRAPPC6BQ86SZ2 158 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 ZNF554Q86TJ5 538 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 FAM185AQ8N0U4 392 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 MFSD4AQ8N468 514 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 LINC01356Q8N9X3 169 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 OR13A1Q8NGR1 328 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 OR4K15Q8NH41 348 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 CCDC107Q8WV48 283 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 Q9N2K0 584 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 TAS2R3Q9NYW6 316 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 YLPM1P49750 1951 aaKnown RBP11.84□□□□□ -0.51
UPF1-211ENST00000600868 ITPR3Q14573 2671 aa11.84□□□□□ -0.51
UPF1-211ENST00000600868 AKAP9Q99996 3911 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 KIR2DS1A0A191URI9 304 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 A0A1W2PPH5 198 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 A0A1W2PQ09 198 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 GABARAPH6UMI1 98 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 GSTZ1O43708 216 aaPredicted RBP11.83□□□□□ -0.52
UPF1-211ENST00000600868 ORC5O43913 435 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 MSMBP08118 114 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 IGHV4-31P0DP07 118 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 RCC1P18754 421 aaPredicted RBP11.83□□□□□ -0.52
UPF1-211ENST00000600868 GZMHP20718 246 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 GUCA2AQ02747 115 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 LSAMPQ13449 338 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 ZNF273Q14593 569 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 Q6ZPA2 131 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 Q6ZS49 121 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 CIARTQ8N365 385 aaPredicted RBP11.83□□□□□ -0.52
UPF1-211ENST00000600868 MRGPRDQ8TDS7 321 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 SMIM4Q8WVI0 70 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 GCDHQ92947 438 aaPredicted RBP11.83□□□□□ -0.52
UPF1-211ENST00000600868 LINC00574Q9H8X3 128 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 MMP26Q9NRE1 261 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 OPN4Q9UHM6 478 aa11.83□□□□□ -0.52
UPF1-211ENST00000600868 ANAPC10Q9UM13 185 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms