RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 COX7A1P24310 79 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 CD34P28906 385 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 SSX1Q16384 188 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 SLC35E4Q6ICL7 350 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 CD200R1LQ6Q8B3 271 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 RTN4RL2Q86UN3 420 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 SPARTQ8N0X7 666 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 PLPPR1Q8TBJ4 325 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 FCGR1BQ92637 280 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 TMEM203Q969S6 136 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 Q96M66 194 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 CST11Q9H112 138 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 VPREB3Q9UKI3 123 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 LRRC42Q9Y546 428 aa13.13□□□□□ -0.31
LSM4-206ENST00000600289 IGHV2-26A0A0B4J1V2 119 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 MEX3AA1L020 520 aaKnown RBP13.12□□□□□ -0.31
LSM4-206ENST00000600289 H3BUI4 141 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 SLC22A1O15245 554 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 GLAP06280 429 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 MGMTP16455 207 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 LGALS4P56470 323 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 FABP5Q01469 135 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 TAF9Q16594 264 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 AWAT1Q58HT5 328 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 MINOS1Q5TGZ0 78 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 GDPGP1Q6ZNW5 385 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 C3orf56Q8N813 242 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 ZNF565Q8N9K5 539 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 OR6M1Q8NGM8 313 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 C17orf50Q8WW18 174 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 CLEC7AQ9BXN2 247 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 ZNF581Q9P0T4 197 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 KIF25Q9UIL4 384 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 MINOS1-NBL1R4GNA1 71 aa13.12□□□□□ -0.31
LSM4-206ENST00000600289 KBTBD11-OT1A0A1B0GTJ5 212 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 BTBD17A6NE02 478 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 FAM181BA6NEQ2 426 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 VGLL3A8MV65 326 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 HSPB6O14558 160 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 GPR137BO60478 399 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 MMP23AO75900 390 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 NDUFA7O95182 113 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 ARG1P05089 322 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 CDK2P24941 298 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 HTR2CP28335 458 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 RBM39Q14498 530 aaKnown RBP13.11□□□□□ -0.31
LSM4-206ENST00000600289 C17orf58Q2M2W7 97 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 LRRC75BQ2VPJ9 315 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 KCTD21Q4G0X4 260 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 GAPTQ8N292 157 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 TMEM104Q8NE00 496 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 OR10A7Q8NGE5 316 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 MALSU1Q96EH3 234 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 MMP24Q9Y5R2 645 aa13.11□□□□□ -0.31
LSM4-206ENST00000600289 MEIKINA0A087WXM9 373 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 TMEM30CPA0ZSE6 113 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 NPIPB11E5RHQ5 1161 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 CCRL2O00421 344 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 CRTAPO75718 401 aaPredicted RBP13.1□□□□□ -0.31
LSM4-206ENST00000600289 IL1AP01583 271 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 IGLV1-47P01700 117 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 RANBP1P43487 201 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 ATAD3CQ5T2N8 411 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 PRAMEF5Q5TYX0 476 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 ZNF773Q6PK81 442 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 ZNF497Q6ZNH5 498 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 OR13A1Q8NGR1 328 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 GFI1Q99684 422 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 SELENOIQ9C0D9 397 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 CALYQ9NYX4 217 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 C1RLQ9NZP8 487 aa13.1□□□□□ -0.31
LSM4-206ENST00000600289 A0A1B0GUS0 222 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 TRDV1A0A1B0GX56 115 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 MCRIP1C9JLW8 97 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 SLC17A2O00624 439 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 CA11O75493 328 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 BPNT1O95861 308 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 VSIG8P0DPA2 414 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 CALRP27797 417 aaKnown RBP13.09□□□□□ -0.31
LSM4-206ENST00000600289 GDNFP39905 211 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 GLP1RP43220 463 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 DYNLT3P51808 116 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 QRFPP83859 136 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 LDLRAD2Q5SZI1 272 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 RAB12Q6IQ22 244 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 LIAT1Q6ZQX7 453 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 SLC16A12Q6ZSM3 486 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 LHFPL4Q7Z7J7 247 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 OR4P4Q8NGL7 312 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 KCNG3Q8TAE7 436 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 ZNF596Q8TC21 504 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 KIRREL1Q96J84 757 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 SSX3Q99909 188 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 TM2D1Q9BX74 207 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 BANF2Q9H503 90 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 TNFRSF19Q9NS68 423 aa13.09□□□□□ -0.31
LSM4-206ENST00000600289 TRAV1-2A0A0B4J238 106 aa13.08□□□□□ -0.32
LSM4-206ENST00000600289 POM121CA8CG34 1229 aa13.08□□□□□ -0.32
LSM4-206ENST00000600289 TMEM14DPA8MWL7 114 aa13.08□□□□□ -0.32
LSM4-206ENST00000600289 H3BUX3 64 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms