RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 MRGPRDQ8TDS7 321 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 APH1BQ8WW43 257 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 LEAP2Q969E1 77 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 MYDGFQ969H8 173 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 TMEM106AQ96A25 262 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 SLC29A1Q99808 456 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 METTL9Q9H1A3 318 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 TMEM138Q9NPI0 162 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 PAK1IP1Q9NWT1 392 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 AURKAIP1Q9NWT8 199 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 SMPD3Q9NY59 655 aaPredicted RBP7.81□□□□□ -1.16
VRK3-216ENST00000599342 ING4Q9UNL4 249 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 ST3GAL6Q9Y274 331 aa7.81□□□□□ -1.16
VRK3-216ENST00000599342 PSMB11A5LHX3 300 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 CDRT1O95170 752 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 BAG2O95816 211 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 AMY1AP04745 511 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 AMY2AP04746 511 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 SNRNP70P08621 437 aaKnown RBP7.8□□□□□ -1.16
VRK3-216ENST00000599342 LIMS3P0CW19 117 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 LIMS4P0CW20 117 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 CGB3P0DN86 165 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 CGB7P0DN87 165 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 TMEM11P17152 192 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 SERPINA2P20848 420 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 DCKP27707 260 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 BDKRB2P30411 391 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 SSTR5P35346 364 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 RBM11P57052 281 aaKnown RBP7.8□□□□□ -1.16
VRK3-216ENST00000599342 PAX5Q02548 391 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 MED21Q13503 144 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 TCTEX1D4Q5JR98 221 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 UTF1Q5T230 341 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 OR2G6Q5TZ20 316 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 XAF1Q6GPH4 301 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 LINC00596Q86U02 117 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 THNSL2Q86YJ6 484 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 OR8H3Q8N146 312 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 DRAM1Q8N682 238 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 SUMF2Q8NBJ7 301 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 OR10A7Q8NGE5 316 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 OR51D1Q8NGF3 324 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 RFESDQ8TAC1 157 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 PLPPR1Q8TBJ4 325 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 RGP1Q92546 391 aaPredicted RBP7.8□□□□□ -1.16
VRK3-216ENST00000599342 RDH12Q96NR8 316 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 DPCDQ9BVM2 203 aaPredicted RBP7.8□□□□□ -1.16
VRK3-216ENST00000599342 FGF20Q9NP95 211 aaPredicted RBP7.8□□□□□ -1.16
VRK3-216ENST00000599342 CHCHD3Q9NX63 227 aaKnown RBP7.8□□□□□ -1.16
VRK3-216ENST00000599342 CKLFQ9UBR5 152 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 PSG11Q9UQ72 335 aa7.8□□□□□ -1.16
VRK3-216ENST00000599342 A0A1W2PPI3 338 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 TMEM30CPA0ZSE6 113 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A18PA6NE21 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A16PA6NEW6 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A20PA6NIJ5 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A9PA6NNJ1 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A12PA8MX19 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A5PA8MXJ8 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 NPIPB11E5RHQ5 1161 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 HSD17B6O14756 317 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 ZNF780AO75290 641 aaPredicted RBP7.79□□□□□ -1.16
VRK3-216ENST00000599342 WBP4O75554 376 aaKnown RBP7.79□□□□□ -1.16
VRK3-216ENST00000599342 DUS4LO95620 317 aaKnown RBP7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A15PP0C7V4 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A13PP0C7W8 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A14PP0C7W9 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 FAM90A24PP0C7X0 464 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 ETV1P50549 477 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 RIPK1Q13546 671 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 SMN1Q16637 294 aaKnown RBP7.79□□□□□ -1.16
VRK3-216ENST00000599342 MPV17LQ2QL34 196 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 NHLRC3Q5JS37 347 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 ATAD3CQ5T2N8 411 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 C10orf99Q6UWK7 81 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 ASCL4Q6XD76 172 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 SLC16A12Q6ZSM3 486 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 WFDC9Q8NEX5 89 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 Q8NFD4 153 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 OR52N1Q8NH53 320 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 NEK7Q8TDX7 302 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 CHPT1Q8WUD6 406 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 SMIM19Q96E16 107 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 RCC1LQ96I51 464 aaKnown RBP7.79□□□□□ -1.16
VRK3-216ENST00000599342 IFT22Q9H7X7 185 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 LINC00574Q9H8X3 128 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 IL36GQ9NZH8 169 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 ZNF281Q9Y2X9 895 aa7.79□□□□□ -1.16
VRK3-216ENST00000599342 EXOSC1Q9Y3B2 195 aaKnown RBP7.79□□□□□ -1.16
VRK3-216ENST00000599342 TRAV39A0A0B4J263 110 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 SERPINE3A8MV23 424 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 EBAG9O00559 213 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 SDCBPO00560 298 aaPredicted RBP7.78□□□□□ -1.16
VRK3-216ENST00000599342 GEMIN2O14893 280 aaKnown RBP7.78□□□□□ -1.16
VRK3-216ENST00000599342 FGF16O43320 207 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 IGKV1D-33P01593 117 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 IGKV1-33P01594 117 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 GTF2F2P13984 249 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 GZMHP20718 246 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 SLC35B1P78383 322 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms