RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 EMX1Q04741 257 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-213ENST00000598355 PRAMEF5Q5TYX0 476 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 SLC35E4Q6ICL7 350 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 OR52W1Q6IF63 320 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 CD200R1LQ6Q8B3 271 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 BAIAP2L2Q6UXY1 529 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 GDPGP1Q6ZNW5 385 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 CEACAM19Q7Z692 300 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 GAPTQ8N292 157 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 OR4P4Q8NGL7 312 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 OR13A1Q8NGR1 328 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 PIFOQ8TCI5 191 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 TAF15Q92804 592 aaKnown RBP eCLIP13.06□□□□□ -0.32
TRIM28-213ENST00000598355 GFI1Q99684 422 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 CLEC7AQ9BXN2 247 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 YTHDF1Q9BYJ9 559 aaKnown RBP13.06□□□□□ -0.32
TRIM28-213ENST00000598355 SPACA1Q9HBV2 294 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 TNFRSF19Q9NS68 423 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 KBTBD11-OT1A0A1B0GTJ5 212 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 A0A1B0GUS0 222 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 BTBD17A6NE02 478 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 H3BUX3 64 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 SLC22A1O15245 554 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 IL1AP01583 271 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 UBBP0CG47 229 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 MGMTP16455 207 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 MDKP21741 143 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-213ENST00000598355 DYNLT3P51808 116 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 RAG2P55895 527 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 LGALS4P56470 323 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 FABP5Q01469 135 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 UBE2UQ5VVX9 321 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 SIGIRRQ6IA17 410 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 RTN4RL2Q86UN3 420 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 TMEM203Q969S6 136 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 MALSU1Q96EH3 234 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 KIRREL1Q96J84 757 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 SSX3Q99909 188 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 ZNF747Q9BV97 191 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 BARHL1Q9BZE3 327 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 NDUFB11Q9NX14 153 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 CALYQ9NYX4 217 aa13.05□□□□□ -0.32
TRIM28-213ENST00000598355 MEIKINA0A087WXM9 373 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 POM121CA8CG34 1229 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 ARL6IP5O75915 188 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 PAX6P26367 422 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 GLP1RP43220 463 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 GLT8D1Q68CQ7 371 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 ZNF497Q6ZNH5 498 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 SVOPQ8N4V2 548 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 OR4F5Q8NH21 305 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 ZNF286AQ9HBT8 521 aa13.04□□□□□ -0.32
TRIM28-213ENST00000598355 TMEM30CPA0ZSE6 113 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 TSPAN9O75954 239 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 CRYBA1P05813 215 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 GLAP06280 429 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 VSIG8P0DPA2 414 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 GALP22466 123 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 OMGP23515 440 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 QRFPP83859 136 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 UNC119Q13432 240 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 UTF1Q5T230 341 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 LIAT1Q6ZQX7 453 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 SPARTQ8N0X7 666 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 ABHD12Q8N2K0 398 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 C3orf56Q8N813 242 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 ZNF565Q8N9K5 539 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 OR10A7Q8NGE5 316 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 OR6M1Q8NGM8 313 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 CST11Q9H112 138 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 SLITRK2Q9H156 845 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 BANF2Q9H503 90 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 C16orf95Q9H693 158 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 ING3Q9NXR8 418 aa13.03□□□□□ -0.32
TRIM28-213ENST00000598355 TMEM14DPA8MWL7 114 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 C15orf65H3BRN8 121 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 SLC17A2O00624 439 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 CRTAPO75718 401 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-213ENST00000598355 HTR2CP28335 458 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 SSTR5P35346 364 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 HLA-DRB5Q30154 266 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 DHRS7BQ6IAN0 325 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-213ENST00000598355 RAB12Q6IQ22 244 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 Q6ZSV7 163 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 ZNF596Q8TC21 504 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 MRGPRDQ8TDS7 321 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 WFDC12Q8WWY7 111 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 FCGR1BQ92637 280 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 TM2D1Q9BX74 207 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 SELENOIQ9C0D9 397 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 LRRC42Q9Y546 428 aa13.02□□□□□ -0.33
TRIM28-213ENST00000598355 CLPSL1A2RUU4 121 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 PDCD6O75340 191 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 CA11O75493 328 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 BPNT1O95861 308 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 MT-ND4P03905 459 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 FUT3P21217 361 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 HTR1DP28221 377 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 RPS27AP62979 156 aaKnown RBP13.01□□□□□ -0.33
TRIM28-213ENST00000598355 DYNC1I2Q13409 638 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms