RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 E9PI62 339 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 NFYBP25208 207 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 GLP1RP43220 463 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 OR3A4PP47883 348 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 GP2P55259 537 aaKnown RBP10.81□□□□□ -0.68
TRIM28-211ENST00000597968 SLC35B1P78383 322 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 ZNF816Q0VGE8 651 aaPredicted RBP10.81□□□□□ -0.68
TRIM28-211ENST00000597968 EBI3Q14213 229 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 RBM39Q14498 530 aaKnown RBP10.81□□□□□ -0.68
TRIM28-211ENST00000597968 GPR148Q8TDV2 347 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 TSEN15Q8WW01 171 aaKnown RBP10.81□□□□□ -0.68
TRIM28-211ENST00000597968 GPER1Q99527 375 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 ZNF649Q9BS31 505 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 C9orf16Q9BUW7 83 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 GON7Q9BXV9 100 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 PPIL3Q9H2H8 161 aaKnown RBP10.81□□□□□ -0.68
TRIM28-211ENST00000597968 RAB9BQ9NP90 201 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 FAM118AQ9NWS6 357 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 PSG11Q9UQ72 335 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 NOTCH3Q9UM47 2321 aa10.81□□□□□ -0.68
TRIM28-211ENST00000597968 LOC100130705A0A1B0GUX0 176 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 A0A1W2PPI3 338 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 CCRL2O00421 344 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 BAG2O95816 211 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 IGHG2P01859 326 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 RSU1Q15404 277 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 TMEM30BQ3MIR4 351 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 RSBN1Q5VWQ0 802 aaPredicted RBP10.8□□□□□ -0.68
TRIM28-211ENST00000597968 LPCAT4Q643R3 524 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 RPL22L1Q6P5R6 122 aaKnown RBP10.8□□□□□ -0.68
TRIM28-211ENST00000597968 FOXRED2Q8IWF2 684 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 PQLC1Q8N2U9 271 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 LINC00311Q8N616 119 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 C5orf56Q8N8D9 126 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 LINC00482Q8N8I6 264 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 OR13A1Q8NGR1 328 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 TNFAIP8L1Q8WVP5 186 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 APH1BQ8WW43 257 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 PDCD1LG2Q9BQ51 273 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 KIF25Q9UIL4 384 aa10.8□□□□□ -0.68
TRIM28-211ENST00000597968 IRGMA1A4Y4 181 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 FAM172BPA6NC97 362 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 EBAG9O00559 213 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 GABRPO00591 440 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 MPIG6BO95866 241 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 GAPDHP04406 335 aaKnown RBP10.79□□□□□ -0.68
TRIM28-211ENST00000597968 SNRNP70P08621 437 aaKnown RBP10.79□□□□□ -0.68
TRIM28-211ENST00000597968 TMEM11P17152 192 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 MYCNOSP40205 109 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 RPL23AP62750 156 aaKnown RBP10.79□□□□□ -0.68
TRIM28-211ENST00000597968 SMN1Q16637 294 aaKnown RBP10.79□□□□□ -0.68
TRIM28-211ENST00000597968 MPV17LQ2QL34 196 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 C9orf152Q5JTZ5 239 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 VAX1Q5SQQ9 334 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 OR8H1Q8NGG4 311 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 OR52I1Q8NGK6 324 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 OR10X1Q8NGY0 326 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 OR56B4Q8NH76 319 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 RDH12Q96NR8 316 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 S100A13Q99584 98 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 METTL9Q9H1A3 318 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 SPACA1Q9HBV2 294 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 TMEM138Q9NPI0 162 aa10.79□□□□□ -0.68
TRIM28-211ENST00000597968 K7EIL1 84 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 TXNL1O43396 289 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 ORC5O43913 435 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 CSTBP04080 98 aaKnown RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 DCKP27707 260 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 THBS3P49746 956 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 GTF2A1P52655 376 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 PPP3R1P63098 170 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 GPR176Q14439 515 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 HES1Q14469 280 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 KHDC1LQ5JSQ8 128 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 TMPRSS11AQ6ZMR5 421 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 TGIF2LXQ8IUE1 241 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 MRPL41Q8IXM3 137 aaKnown RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 IZUMO1Q8IYV9 350 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 DRAM1Q8N682 238 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 TMEM106AQ96A25 262 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 MRPS24Q96EL2 167 aaKnown RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 NR1H4Q96RI1 486 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 DPCDQ9BVM2 203 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 FGF20Q9NP95 211 aaPredicted RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 LIN7CQ9NUP9 197 aaKnown RBP10.78□□□□□ -0.68
TRIM28-211ENST00000597968 ST3GAL6Q9Y274 331 aa10.78□□□□□ -0.68
TRIM28-211ENST00000597968 TMEM30CPA0ZSE6 113 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 SERPINE3A8MV23 424 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 AP4M1O00189 453 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 HSD17B6O14756 317 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 GPX5O75715 221 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 IL3RAP26951 378 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF93P35789 620 aaPredicted RBP10.77□□□□□ -0.69
TRIM28-211ENST00000597968 RBM11P57052 281 aaKnown RBP10.77□□□□□ -0.69
TRIM28-211ENST00000597968 STEAP3Q658P3 488 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 TEX38Q6PEX7 206 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 UNQ9370/PRO34162Q6UXP9 181 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 SLC35E3Q7Z769 313 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 SATL1Q86VE3 508 aa10.77□□□□□ -0.69
TRIM28-211ENST00000597968 SUMF2Q8NBJ7 301 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms