RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	AQP10	Q96PS8	301 aa		13.18	□□□□□ -0.3
DDX39A-209	ENST00000589318	NUDT16L1	Q9BRJ7	211 aa	Known RBP	13.18	□□□□□ -0.3
DDX39A-209	ENST00000589318	TMEM59	Q9BXS4	323 aa		13.18	□□□□□ -0.3
DDX39A-209	ENST00000589318	SELENOI	Q9C0D9	397 aa		13.18	□□□□□ -0.3
DDX39A-209	ENST00000589318	TMEM235	A6NFC5	223 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CD300LB	A8K4G0	201 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CRTAP	O75718	401 aa	Predicted RBP	13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CST4	P01036	141 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	IGLV1-44	P01699	117 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	HOXC12	P31275	282 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	FUT6	P51993	359 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	IL13RA1	P78552	427 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	PLCXD3	Q63HM9	321 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	DHRS11	Q6UWP2	260 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	UNQ6494/PRO21346	Q6UXR6	183 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	FAM89B	Q8N5H3	189 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	LYPD6B	Q8NI32	183 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	HPSE2	Q8WWQ2	592 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	SLAMF9	Q96A28	289 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	BORCS8	Q96FH0	119 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CPNE2	Q96FN4	548 aa	Predicted RBP	13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CYYR1	Q96J86	154 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	LURAP1	Q96LR2	239 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	TECTB	Q96PL2	329 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	SSX3	Q99909	188 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318		A0A0B4J2A0	478 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	C7orf77	A4D0Y5	90 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	TSTD3	H0UI37	97 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	LILRA1	O75019	489 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	RNF224	P0DH78	156 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	PRDX4	Q13162	271 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	KRBOX4	Q5JUW0	171 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	PRSS54	Q6PEW0	395 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	FBXW12	Q6X9E4	464 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	ASCL4	Q6XD76	172 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CSNK2A3	Q8NEV1	391 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	OR5L1	Q8NGL2	311 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	DVL3	Q92997	716 aa	Predicted RBP	13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CST11	Q9H112	138 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	CDH20	Q9HBT6	801 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	OBP2B	Q9NPH6	170 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	SHPK	Q9UHJ6	478 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	TMED3	Q9Y3Q3	217 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	SLC25A15	Q9Y619	301 aa		13.17	□□□□□ -0.3
DDX39A-209	ENST00000589318	IGKV1-12	A0A0C4DH73	117 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318		A0A1B0GV90	55 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	MEIS3P1	A6NDR6	274 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	FOXI3	A8MTJ6	420 aa	Predicted RBP	13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	SEC14L6	B5MCN3	397 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	SOCS1	O15524	211 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	SPRY1	O43609	319 aa	Predicted RBP	13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	ANGPTL7	O43827	346 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	SCGN	O76038	276 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	IGKV1D-12	P01611	117 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	TBP	P20226	339 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	TMEM50B	P56557	158 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	PLAC9	Q5JTB6	97 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	SPATA46	Q5T0L3	261 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	ARRDC1	Q8N5I2	433 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	ZNF383	Q8NA42	475 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	OR13C8	Q8NGS7	320 aa		13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.16	□□□□□ -0.3
DDX39A-209	ENST00000589318	ELOA3C	A0A087WX78	387 aa	Predicted RBP	13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318		A0A0G2JNJ9	132 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318		A6NLC8	198 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CCS	O14618	274 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CHRM2	P08172	466 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CECR9	P0C854	216 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	TMEM225B	P0DP42	221 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	SERPINA2	P20848	420 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CD80	P33681	288 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	ERVS71-1	P61550	626 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	MRPL49	Q13405	166 aa	Known RBP	13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	AWAT1	Q58HT5	328 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	PYY3	Q5JQD4	70 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CALHM1	Q8IU99	346 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	TM2D1	Q9BX74	207 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318		Q9UFV3	132 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	SLC7A11	Q9UPY5	501 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	ESPL1	Q14674	2120 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	C5orf51	A6NDU8	294 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318		A8MXE2	369 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	MSTN	O14793	375 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	MED6	O75586	246 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	IFNA2	P01563	188 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	GNB3	P16520	340 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CEACAM6	P40199	344 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	UCP2	P55851	309 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	PPP1CB	P62140	327 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	PPP1R1A	Q13522	171 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	CEACAM21	Q3KPI0	293 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	FAM169B	Q8N8A8	192 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	BHLHE23	Q8NDY6	225 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	OR2J1	Q9GZK6	312 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	SMDT1	Q9H4I9	107 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	VSIG4	Q9Y279	399 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	AMDHD2	Q9Y303	409 aa		13.15	□□□□□ -0.3
DDX39A-209	ENST00000589318	SHANK1	Q9Y566	2161 aa		13.14	□□□□□ -0.31
DDX39A-209	ENST00000589318	IGHV1-18	A0A0C4DH31	117 aa		13.14	□□□□□ -0.31
DDX39A-209	ENST00000589318		A0A1W2PPH5	198 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms