RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HECTD1Q9ULT8 2610 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 FUOMA2VDF0 154 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 MEIS3P1A6NDR6 274 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 DVL1O14640 695 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 GPR37O15354 613 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 NDUFB3O43676 98 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 ECDO95905 644 aaPredicted RBP13.39□□□□□ -0.27
SS18-211ENST00000578954 CSF1P09603 554 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 GSTT2BP0CG30 244 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 RPS2P15880 293 aaKnown RBP13.39□□□□□ -0.27
SS18-211ENST00000578954 AESQ08117 197 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 CR1LQ2VPA4 569 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 LRRC10Q5BKY1 277 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 KRBOX4Q5JUW0 171 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 STEAP3Q658P3 488 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 GDPD3Q7L5L3 318 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 TMEM229BQ8NBD8 167 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 OR8B3Q8NGG8 313 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 OR8B2Q96RD0 313 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 IFT46Q9NQC8 304 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 ABCB10Q9NRK6 738 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 KIF25Q9UIL4 384 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 MGAT4AQ9UM21 535 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 ODAMA1E959 279 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 CD74P04233 296 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 GLIPR1P48060 266 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 NPY4RP50391 375 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 DYRK1AQ13627 763 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 C11orf91Q3C1V1 193 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 C16orf87Q6PH81 154 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 NLRC3Q7RTR2 1065 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 ZNF554Q86TJ5 538 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 BEST4Q8NFU0 473 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 OR4K15Q8NH41 348 aa13.38□□□□□ -0.27
SS18-211ENST00000578954 CHMP1AQ9HD42 196 aaPredicted RBP13.38□□□□□ -0.27
SS18-211ENST00000578954 ZNF230Q9UIE0 474 aaPredicted RBP13.38□□□□□ -0.27
SS18-211ENST00000578954 MALRD1Q5VYJ5 2156 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 DSCAML1Q8TD84 2053 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 IGKV1D-8A0A087WSZ0 117 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 IGHV2-5P01817 119 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 TBPP20226 339 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 TAS2R19P59542 299 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 AP3S2P59780 193 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 MEF2CQ06413 473 aaPredicted RBP13.37□□□□□ -0.27
SS18-211ENST00000578954 EDDM3AQ14507 147 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 HMGN3Q15651 99 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 WDR25Q64LD2 544 aaPredicted RBP13.37□□□□□ -0.27
SS18-211ENST00000578954 TRAT1Q6PIZ9 186 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 PRSS57Q6UWY2 283 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 TCF23Q7RTU1 214 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 FGFRL1Q8N441 504 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 TOMM5Q8N4H5 51 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 SETD6Q8TBK2 473 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 CORO2AQ92828 525 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 ST6GALNAC5Q9BVH7 336 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 ZNF286AQ9HBT8 521 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 TBC1D24Q9ULP9 559 aa13.37□□□□□ -0.27
SS18-211ENST00000578954 IGHV4-30-2A0A087WSY4 118 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 MEIKINA0A087WXM9 373 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 TRBV23-1A0A0A0MS06 115 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 KIR2DS1A0A191URI9 304 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 A8MXK9 166 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 PLA2G10O15496 165 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 CGB3P0DN86 165 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 CGB7P0DN87 165 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 SLC25A16P16260 332 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 RCC1P18754 421 aaPredicted RBP13.36□□□□□ -0.27
SS18-211ENST00000578954 KIR2DS4P43632 304 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 LMO4P61968 165 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 HLA-DRB3P79483 266 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 ASAH1Q13510 395 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 KIR2DS1Q14954 304 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 CLEC12BQ2HXU8 276 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 ACTBL2Q562R1 376 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 C6orf183Q5T699 404 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 OR52W1Q6IF63 320 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 TPRX1Q8N7U7 411 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 OR13A1Q8NGR1 328 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 CLDND2Q8NHS1 167 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 C8orf46Q8TAG6 207 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 MAFIPQ8WZ33 124 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 C7orf50Q9BRJ6 194 aaKnown RBP13.36□□□□□ -0.27
SS18-211ENST00000578954 OR6C3Q9NZP0 311 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 LPAR3Q9UBY5 353 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 OPN4Q9UHM6 478 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 ANXA10Q9UJ72 324 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 TRAPPC2LQ9UL33 140 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 PCDHB10Q9UN67 800 aa13.36□□□□□ -0.27
SS18-211ENST00000578954 ZNF736B4DX44 427 aaPredicted RBP13.35□□□□□ -0.27
SS18-211ENST00000578954 TRDCB7Z8K6 153 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 DIRAS3O95661 229 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 CD3DP04234 171 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 AKAIN1P0CW23 69 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 NDUFB7P17568 137 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 INPP1P49441 399 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 EDDM3BP56851 147 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 TAS2R46P59540 309 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 VAX1Q5SQQ9 334 aa13.35□□□□□ -0.27
SS18-211ENST00000578954 ZNF57Q68EA5 555 aaPredicted RBP13.35□□□□□ -0.27
SS18-211ENST00000578954 STEAP1BQ6NZ63 245 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms