RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 KIF25Q9UIL4 384 aa7.05□□□□□ -1.28
NUP88-211ENST00000575976 FBN1P35555 2871 aaKnown RBP7.04□□□□□ -1.28
NUP88-211ENST00000575976 MEIKINA0A087WXM9 373 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 TMEM30CPA0ZSE6 113 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 A6NHS1 94 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 J3QLI3 93 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 HPGDSO60760 199 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 MMP9P14780 707 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 HIST1H1DP16402 221 aaKnown RBP7.04□□□□□ -1.28
NUP88-211ENST00000575976 GNB3P16520 340 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 DLX6P56179 175 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 ERVFRD-1P60508 538 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 PAX5Q02548 391 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 OLFML2AQ68BL7 652 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 MZT2AQ6P582 158 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 ZNF497Q6ZNH5 498 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 C1orf229Q6ZS94 237 aaPredicted RBP7.04□□□□□ -1.28
NUP88-211ENST00000575976 TRAPPC6BQ86SZ2 158 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 C11orf42Q8N5U0 333 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 Q8N7P7 452 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 SAMD12Q8N8I0 201 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 DTX3Q8N9I9 347 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 OR13A1Q8NGR1 328 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 OR4K15Q8NH41 348 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 CCDC107Q8WV48 283 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 AP3S1Q92572 193 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 CORO2AQ92828 525 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 RAB3CQ96E17 227 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 DMRTB1Q96MA1 342 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 WDFY2Q96P53 400 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 DCUN1D5Q9BTE7 237 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 SLIRPQ9GZT3 109 aaKnown RBP7.04□□□□□ -1.28
NUP88-211ENST00000575976 SIRPDQ9H106 197 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 ABCG5Q9H222 651 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 NCOR1P1Q9H4R4 102 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 ZMAT3Q9HA38 289 aaKnown RBP7.04□□□□□ -1.28
NUP88-211ENST00000575976 OR6C3Q9NZP0 311 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 CCDC59Q9P031 241 aaKnown RBP7.04□□□□□ -1.28
NUP88-211ENST00000575976 LPAR3Q9UBY5 353 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 AK3Q9UIJ7 227 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 HSF4Q9ULV5 492 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 KCNK7Q9Y2U2 307 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 KPTNQ9Y664 436 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 AUP1Q9Y679 476 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 LINC00312Q9Y6C7 94 aa7.04□□□□□ -1.28
NUP88-211ENST00000575976 NSD1Q96L73 2696 aaPredicted RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 A0A075B6Q4 140 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 TRGV10A0A0A0MS01 117 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 A0A1W2PPH5 198 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 C17orf98A8MV24 154 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 MFNGO00587 321 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 CTDSP2O14595 271 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 CA11O75493 328 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 SCGNO76038 276 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 TOX4O94842 621 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 EIF4EP06730 217 aaKnown RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 ZNF728P0DKX0 622 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 CGB3P0DN86 165 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 CGB7P0DN87 165 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 DLX1P56177 255 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 PRB3Q04118 309 aaPredicted RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 C17orf58Q2M2W7 97 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 ZNF260Q3ZCT1 412 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 CDNFQ49AH0 187 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 UBE2NLQ5JXB2 153 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 METTL11BQ5VVY1 283 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 IL17RELQ6ZVW7 336 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 PRIMA1Q86XR5 153 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 IZUMO1Q8IYV9 350 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 GAPTQ8N292 157 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 KIR3DL3Q8N743 410 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 MRPL30Q8TCC3 161 aaKnown RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 MRGPRDQ8TDS7 321 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 PHF21AQ96BD5 680 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 S100A16Q96FQ6 103 aaKnown RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 CMTM3Q96MX0 182 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 ZNF714Q96N38 554 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 TBX15Q96SF7 602 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 CMSS1Q9BQ75 279 aaKnown RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 HDHD3Q9BSH5 251 aaPredicted RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 PCGF1Q9BSM1 259 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 MIXL1Q9H2W2 232 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 DIABLOQ9NR28 239 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 SIRT7Q9NRC8 400 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 TAS2R3Q9NYW6 316 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 ELF5Q9UKW6 265 aaPredicted RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 TRAPPC2LQ9UL33 140 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 UBE2J1Q9Y385 318 aaPredicted RBP7.03□□□□□ -1.28
NUP88-211ENST00000575976 VPS13CQ709C8 3753 aa7.03□□□□□ -1.28
NUP88-211ENST00000575976 DOCK11Q5JSL3 2073 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 ABCA1O95477 2261 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 TRAV18A0A075B6X5 111 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 ZNF729A6NN14 1252 aaPredicted RBP7.02□□□□□ -1.29
NUP88-211ENST00000575976 FAM25AB3EWG3 89 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 FAM25CB3EWG5 89 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 FAM25GB3EWG6 89 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 INAFM1C9JVW0 142 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 M0R1W7 72 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 MMP23AO75900 390 aa7.02□□□□□ -1.29
NUP88-211ENST00000575976 NAPSAO96009 420 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms