RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TTC23Q5W5X9 447 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 C8orf86Q6ZUL3 223 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 SERPINA12Q8IW75 414 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 ACBD7Q8N6N7 88 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 OR5D14Q8NGL3 314 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 LEAP2Q969E1 77 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 P2RX4Q99571 388 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 NKX1-2Q9UD57 310 aaPredicted RBP16.65■□□□□ 0.26
VPS53-216ENST00000574029 AASSQ9UDR5 926 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 PSG11Q9UQ72 335 aa16.65■□□□□ 0.26
VPS53-216ENST00000574029 MEIKINA0A087WXM9 373 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 TRAV24A0A0B4J272 114 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 HSPB6O14558 160 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 SULT1B1O43704 296 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 IL1AP01583 271 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 IGHV3-7P01780 117 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 RAB7AP51149 207 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 ADARB1P78563 741 aaKnown RBP16.64■□□□□ 0.25
VPS53-216ENST00000574029 PAX5Q02548 391 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 MADCAM1Q13477 382 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 HES1Q14469 280 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 PAN3Q58A45 887 aaKnown RBP16.64■□□□□ 0.25
VPS53-216ENST00000574029 ZNF691Q5VV52 312 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 OR8H3Q8N146 312 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 PARP16Q8N5Y8 322 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 PXT1Q8NFP0 134 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 CNIH3Q8TBE1 160 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 WWC2-AS2Q96NR7 200 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 BARHL1Q9BZE3 327 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 MRPS18AQ9NVS2 196 aaKnown RBP16.64■□□□□ 0.25
VPS53-216ENST00000574029 DNAH9Q9NYC9 4486 aa16.64■□□□□ 0.25
VPS53-216ENST00000574029 SERPINE3A8MV23 424 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 IGHG2P01859 326 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 VSIG8P0DPA2 414 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 RSBN1Q5VWQ0 802 aaPredicted RBP16.63■□□□□ 0.25
VPS53-216ENST00000574029 SLC16A12Q6ZSM3 486 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 DHRSXQ8N5I4 330 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 COMMD1Q8N668 190 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 OR10A7Q8NGE5 316 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 HAVCR2Q8TDQ0 301 aa16.63■□□□□ 0.25
VPS53-216ENST00000574029 NR1H4Q96RI1 486 aaPredicted RBP16.63■□□□□ 0.25
VPS53-216ENST00000574029 IGKV1D-33P01593 117 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 IGKV1-33P01594 117 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 RPSAP08865 295 aaKnown RBP16.62■□□□□ 0.25
VPS53-216ENST00000574029 CCDC159P0C7I6 412 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 SLC35B1P78383 322 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 DCTN2Q13561 401 aaKnown RBP16.62■□□□□ 0.25
VPS53-216ENST00000574029 GALEQ14376 348 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 IL13RA2Q14627 380 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 SYS1Q8N2H4 156 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 KLHL30-AS1Q8NEE0 82 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 Q8NFD4 153 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 PLPPR1Q8TBJ4 325 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 MRGPRDQ8TDS7 321 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 APH1BQ8WW43 257 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 LGALS12Q96DT0 336 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 MRPL48Q96GC5 212 aaKnown RBP16.62■□□□□ 0.25
VPS53-216ENST00000574029 LINC00527Q9UJ94 153 aa16.62■□□□□ 0.25
VPS53-216ENST00000574029 NUDT19A8MXV4 375 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 WBP4O75554 376 aaKnown RBP16.61■□□□□ 0.25
VPS53-216ENST00000574029 ZFPL1O95159 310 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 GNG10P50151 68 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 EBI3Q14213 229 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 HNF4GQ14541 408 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 SLC35E3Q7Z769 313 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 STPG2Q8N412 459 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 RFESDQ8TAC1 157 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 CYGBQ8WWM9 190 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 MYCBPQ99417 103 aaPredicted RBP16.61■□□□□ 0.25
VPS53-216ENST00000574029 ALG8Q9BVK2 526 aa16.61■□□□□ 0.25
VPS53-216ENST00000574029 ISG20L2Q9H9L3 353 aaKnown RBP16.61■□□□□ 0.25
VPS53-216ENST00000574029 RPL36Q9Y3U8 105 aaKnown RBP16.61■□□□□ 0.25
VPS53-216ENST00000574029 TMEM212A6NML5 194 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 H0YHG0 523 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 GABRPO00591 440 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 SSTR5P35346 364 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 KCNJ3P48549 501 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 ZNF816Q0VGE8 651 aaPredicted RBP16.6■□□□□ 0.25
VPS53-216ENST00000574029 RAB40BQ12829 278 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 LTC4SQ16873 150 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 ZNF529Q6P280 563 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 UNQ9370/PRO34162Q6UXP9 181 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 LHFPL3Q86UP9 236 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 ZNF695Q8IW36 515 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 FOXRED2Q8IWF2 684 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 SETD9Q8NE22 299 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 CPNE2Q96FN4 548 aaPredicted RBP16.6■□□□□ 0.25
VPS53-216ENST00000574029 VCXQ9H320 206 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 ZMAT5Q9UDW3 170 aaKnown RBP16.6■□□□□ 0.25
VPS53-216ENST00000574029 DHDHQ9UQ10 334 aa16.6■□□□□ 0.25
VPS53-216ENST00000574029 FADS2O95864 444 aaKnown RBP16.59■□□□□ 0.25
VPS53-216ENST00000574029 CAPGP40121 348 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 DGCR2P98153 550 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 PIGYQ3MUY2 71 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 KLHL22Q53GT1 634 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 ASCL4Q6XD76 172 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 OR10X1Q8NGY0 326 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 OR5AK2Q8NH90 309 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 TNFAIP8L1Q8WVP5 186 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 PDCD1LG2Q9BQ51 273 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 157.6 ms