RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SLC2A2P11168 524 aaPredicted RBP11.26□□□□□ -0.61
CLN3-235ENST00000568497 MGMTP16455 207 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 GADD45AP24522 165 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 LMO1P25800 156 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 MAPK3P27361 379 aaPredicted RBP11.26□□□□□ -0.61
CLN3-235ENST00000568497 UNC119Q13432 240 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 GPR50Q13585 617 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 NKAPLQ5M9Q1 402 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 SAMD5Q5TGI4 173 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 NR2C2APQ86WQ0 139 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 NEK7Q8TDX7 302 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 ZNF714Q96N38 554 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 CHIAQ9BZP6 476 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 NDUFB11Q9NX14 153 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 MEIKINA0A087WXM9 373 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 A0A1W2PPE3 182 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 C17orf98A8MV24 154 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 CLPXO76031 633 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 MELTFP08582 738 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 SSTR5P35346 364 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 RAB13P51153 203 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 DYNC1I2Q13409 638 aaKnown RBP11.25□□□□□ -0.61
CLN3-235ENST00000568497 BLMHQ13867 455 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 IL13RA2Q14627 380 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 LY6EQ16553 131 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 C17orf58Q2M2W7 97 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 RSBN1Q5VWQ0 802 aaPredicted RBP11.25□□□□□ -0.61
CLN3-235ENST00000568497 C11orf87Q6NUJ2 197 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 Q8NFD4 153 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 CHCHD6Q9BRQ6 235 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 METTL8Q9H825 291 aaKnown RBP11.25□□□□□ -0.61
CLN3-235ENST00000568497 PLGRKTQ9HBL7 147 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 IL36GQ9NZH8 169 aa11.25□□□□□ -0.61
CLN3-235ENST00000568497 IGHV3-43A0A0B4J1X8 118 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 LOC100506127A0A0U1RQW1 187 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 hADV38S2A0JD32 116 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 CCRL2O00421 344 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 ARG1P05089 322 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 IGHV1-8P0DP01 117 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 IGHV3-43DP0DP04 118 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 GTF2F2P13984 249 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 CDK2P24941 298 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 NFYBP25208 207 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 HTR2CP28335 458 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 EFNB2P52799 333 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 LSM3P62310 102 aaKnown RBP11.24□□□□□ -0.61
CLN3-235ENST00000568497 QRFPP83859 136 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 KCTD21Q4G0X4 260 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 C1orf100Q5SVJ3 147 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 GLT8D1Q68CQ7 371 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 OR51D1Q8NGF3 324 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 OR5D13Q8NGL4 314 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 OR4K15Q8NH41 348 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 LINC01006Q8NI28 216 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 TBC1D15Q8TC07 691 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 CPNE2Q96FN4 548 aaPredicted RBP11.24□□□□□ -0.61
CLN3-235ENST00000568497 Q96M66 194 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 YTHDF1Q9BYJ9 559 aaKnown RBP11.24□□□□□ -0.61
CLN3-235ENST00000568497 TXNL4BQ9NX01 149 aaKnown RBP11.24□□□□□ -0.61
CLN3-235ENST00000568497 PEX16Q9Y5Y5 336 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 PLXNB1O43157 2135 aa11.24□□□□□ -0.61
CLN3-235ENST00000568497 TET2Q6N021 2002 aaPredicted RBP11.23□□□□□ -0.61
CLN3-235ENST00000568497 TRDV1A0A1B0GX56 115 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 SLC22A1O15245 554 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 SOCS1O15524 211 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 MXD1Q05195 221 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 RAB11BQ15907 218 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 RAB12Q6IQ22 244 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 C6orf201Q7Z4U5 140 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 NKAIN3Q8N8D7 197 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 TSPAN14Q8NG11 270 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 PHYHIPQ92561 330 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 HDHD3Q9BSH5 251 aaPredicted RBP11.23□□□□□ -0.61
CLN3-235ENST00000568497 CENPOQ9BU64 300 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 ZNF286AQ9HBT8 521 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 LINC00312Q9Y6C7 94 aa11.23□□□□□ -0.61
CLN3-235ENST00000568497 MEGF11A6BM72 1044 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 SMIM18P0DKX4 95 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 CD36P16671 472 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 CD24P25063 80 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 GNG10P50151 68 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 UBE2E1P51965 193 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 PROK1P58294 105 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 RPL15P61313 204 aaKnown RBP11.22□□□□□ -0.61
CLN3-235ENST00000568497 MEF2CQ06413 473 aaPredicted RBP11.22□□□□□ -0.61
CLN3-235ENST00000568497 Q6YL49 198 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 TMEM86BQ8N661 226 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 PPP1R35Q8TAP8 253 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 SULT4A1Q9BR01 284 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 UQCC2Q9BRT2 126 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 FAAP24Q9BTP7 215 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 SEBOXQ9HB31 216 aaPredicted RBP11.22□□□□□ -0.61
CLN3-235ENST00000568497 FAM96BQ9Y3D0 163 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 HILPDAQ9Y5L2 63 aa11.22□□□□□ -0.61
CLN3-235ENST00000568497 TRGV10A0A0A0MS01 117 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 TMEM272A0A1B0GTI8 110 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 TMEM14DPA8MWL7 114 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 SLC17A2O00624 439 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 MRPS14O60783 128 aaKnown RBP11.21□□□□□ -0.61
CLN3-235ENST00000568497 ARL6IP5O75915 188 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms